Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-52 209.5 110 100.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.6e-40 167.5 156 62.8
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 4.0e-38 161.4 125 73.6
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 6.8e-38 160.6 156 60.9
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.5e-37 159.5 156 60.3
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.0e-37 159.1 156 60.9
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 4.4e-37 157.9 156 60.3
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 4.4e-37 157.9 156 60.3
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.4e-37 157.9 156 60.3
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.4e-37 157.9 156 60.3
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 4.4e-37 157.9 156 60.3
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 2.2e-36 155.6 156 59.6
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-36 155.6 120 74.2
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-36 154.8 156 59.6
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-36 154.8 156 59.6
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-36 154.8 156 59.6
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 3.7e-36 154.8 156 59.6
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 1.1e-35 153.3 156 59.0
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.4e-35 152.9 156 59.0
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.4e-35 152.1 156 59.6
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.2e-35 151.8 156 59.0
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 4.1e-35 151.4 132 66.7
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 4.1e-35 151.4 158 58.9
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.6e-34 149.4 156 59.0
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.7e-34 148.7 122 67.2
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 3.5e-34 148.3 156 59.0
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 6.6e-33 144.1 153 58.8
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.1e-32 143.3 127 67.7
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 3.4e-29 131.7 81 85.2
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 7.5e-29 130.6 156 53.8
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 1.1e-27 126.7 142 56.3
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.2e-27 125.2 119 63.0
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 7.1e-27 124.0 90 75.6
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 7.1e-27 124.0 76 85.5
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 9.2e-27 123.6 119 63.0
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 7.8e-26 120.6 145 54.5
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.3e-25 119.8 100 71.0
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.3e-25 119.0 76 81.6
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.3e-25 119.0 76 81.6
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 3.0e-25 118.6 82 79.3
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.9e-25 118.2 97 72.2
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 8.6e-25 117.1 74 81.1
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 7.3e-24 114.0 70 84.3
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.6e-23 112.8 118 56.8
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.6e-23 112.8 128 53.1
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 8.1e-23 110.5 82 76.8
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 8.1e-23 110.5 74 79.7
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 4.9e-20 101.3 70 78.6
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 7.1e-19 97.4 55 89.1
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 7.1e-19 97.4 55 89.1
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 7.1e-19 97.4 55 89.1
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-18 96.7 86 67.4
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.0e-18 94.4 114 55.3
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 3.9e-17 91.7 55 85.5
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 5.1e-17 91.3 74 67.6
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.5e-16 89.7 92 62.0
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 4.3e-16 88.2 58 79.3
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 4.7e-15 84.7 47 87.2
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-14 83.6 119 52.1
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 3.1e-14 82.0 50 78.0
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.0e-14 81.6 115 49.6
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 6.9e-14 80.9 51 76.5
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.2e-13 80.1 141 46.1
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 9.9e-13 77.0 54 77.8
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.7e-12 76.3 54 77.8
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.2e-12 75.9 156 31.4
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.3e-09 65.9 43 79.1
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 5.1e-09 64.7 36 88.9
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 5.1e-09 64.7 36 88.9
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.1e-08 63.5 38 84.2
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.1e-08 63.5 38 84.2
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 3.3e-08 62.0 38 84.2
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 3.3e-08 62.0 38 84.2
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 5.6e-08 61.2 115 41.7
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 5.6e-08 61.2 41 75.6
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 1.6e-07 59.7 43 79.1
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 6.2e-07 57.8 33 87.9
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 8.1e-07 57.4 165 35.2
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 2.4e-06 55.8 41 65.9
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.1e-06 55.5 38 76.3
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 6.9e-06 54.3 30 86.7


User provided reference genes

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