Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 9.9e-100 366.7 174 100.0
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.6e-97 359.4 174 97.1
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.7e-97 358.6 174 97.1
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.7e-97 358.6 174 97.1
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-89 333.2 174 91.4
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.5e-84 314.7 174 85.1
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.3e-83 313.2 174 85.6
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.2e-83 312.4 174 85.1
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 6.4e-83 310.8 174 84.5
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.1e-82 310.1 174 83.9
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 3.2e-82 308.5 174 83.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 9.3e-82 307.0 174 83.3
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 9.3e-82 307.0 174 84.5
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.2e-81 306.6 174 83.3
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 2.7e-81 305.4 174 83.3
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 3.5e-81 305.1 174 82.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.8e-80 302.8 174 82.2
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 5.1e-80 301.2 174 82.8
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 6.7e-80 300.8 175 84.0
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-79 300.1 174 82.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-79 299.7 175 81.1
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.5e-79 299.7 174 79.9
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 2.5e-79 298.9 174 80.5
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.5e-79 298.9 177 79.7
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 5.6e-79 297.7 174 82.8
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 7.4e-79 297.4 174 81.0
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 9.6e-79 297.0 174 80.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.3e-78 296.6 174 80.5
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.8e-78 295.4 174 79.3
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 2.8e-78 295.4 174 80.5
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 4.8e-78 294.7 174 80.5
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.2e-78 293.9 174 80.5
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.1e-77 293.5 174 80.5
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 4.0e-77 291.6 180 76.7
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 5.3e-77 291.2 175 80.6
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 6.9e-77 290.8 174 79.3
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.9e-77 290.8 174 79.3
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 6.9e-77 290.8 175 80.6
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 9.0e-77 290.4 174 78.7
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.2e-76 290.0 175 79.4
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.5e-76 289.7 174 79.9
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.5e-76 289.7 150 92.0
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 4.5e-76 288.1 176 78.4
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 5.8e-76 287.7 174 81.6
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.7e-75 286.2 174 77.6
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 3.8e-75 285.0 174 76.4
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 4.9e-75 284.6 171 80.1
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.9e-74 282.7 174 78.7
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.2e-74 282.0 174 75.9
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 4.2e-74 281.6 172 77.3
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 4.2e-74 281.6 174 77.0
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 4.2e-74 281.6 181 75.7
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 5.5e-74 281.2 174 76.4
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 5.5e-74 281.2 174 76.4
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 5.5e-74 281.2 174 76.4
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 5.5e-74 281.2 174 77.6
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 9.3e-74 280.4 174 75.9
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 2.1e-73 279.3 171 78.4
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 2.1e-73 279.3 174 75.9
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 4.6e-73 278.1 174 75.9
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 6.0e-73 277.7 175 76.6
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 6.0e-73 277.7 174 75.9
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.8e-72 276.2 174 75.9
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.8e-72 276.2 175 74.9
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 2.3e-72 275.8 172 75.0
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.3e-72 275.8 175 74.9
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 6.7e-72 274.2 174 75.9
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.1e-71 273.5 174 75.3
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.9e-71 272.7 173 75.7
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 3.3e-71 271.9 174 75.9
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.7e-71 271.2 174 77.0
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 2.8e-70 268.9 180 73.9
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 1.1e-69 266.9 176 73.9
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.8e-69 266.2 177 71.8
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.1e-69 265.4 158 79.1
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 9.0e-69 263.8 250 55.6
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.4e-68 261.9 176 72.2
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.4e-68 261.9 199 65.8
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 4.5e-68 261.5 177 72.9
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 5.9e-68 261.2 175 73.7
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.9e-67 258.8 176 69.9
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 6.5e-67 257.7 159 77.4
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-66 256.9 152 79.6
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.4e-66 256.5 150 80.7
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 3.2e-66 255.4 174 67.2
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 7.2e-66 254.2 186 65.6
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 7.9e-65 250.8 174 71.3
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.0e-64 250.4 173 71.1
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 5.1e-64 248.1 150 79.3
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.3e-63 245.4 144 80.6
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 2.2e-62 242.7 179 67.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 3.7e-62 241.9 174 67.2
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.0e-59 231.5 153 73.9
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.1e-58 230.3 150 74.7
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.1e-58 230.3 175 60.6
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.8e-56 223.0 174 60.9
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 3.3e-55 218.8 174 59.8
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 4.4e-55 218.4 174 59.2
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 4.4e-55 218.4 180 58.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 5.7e-55 218.0 173 59.5
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 2.4e-53 212.6 129 75.2
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 3.1e-53 212.2 138 73.2
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 9.1e-53 210.7 174 58.0
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 2.6e-52 209.1 174 57.5
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.0e-51 207.2 193 58.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.0e-51 207.2 129 76.7
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.3e-51 206.8 150 67.3
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.8e-48 196.4 129 71.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 3.3e-47 192.2 174 51.7
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 4.8e-46 188.3 176 52.8
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.8e-45 186.4 182 53.8
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 9.1e-45 184.1 113 77.0
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 5.0e-43 178.3 174 48.9
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.5e-42 176.8 174 48.9
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.5e-42 176.8 174 48.9
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 4.2e-42 175.3 174 48.3
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 4.2e-42 175.3 174 48.3
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 4.2e-42 175.3 174 48.3
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 4.2e-42 175.3 174 48.3
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 4.2e-42 175.3 174 48.3
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.6e-41 173.3 174 49.4
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.7e-41 172.6 119 69.7
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 1.8e-40 169.9 186 47.3
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.3e-38 163.7 145 53.8
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 2.2e-35 152.9 87 82.8
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.9e-34 149.8 100 72.0
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.2e-34 149.1 91 75.8
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.4e-31 138.7 80 78.8
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 7.5e-31 137.9 100 66.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 4.1e-21 105.5 173 38.7
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.5e-20 102.1 57 71.9
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 5.8e-15 85.1 109 50.5
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-13 80.5 48 75.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 3.0e-11 72.8 49 77.6
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 8.0e-09 64.7 191 27.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.8e-08 61.6 34 88.2


User provided reference genes

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