Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G997.6 Capsicum annuum HOM05D000639 ORTHO05D007519 2.0e-56 222.2 115 100.0
CAN.G134.14 Capsicum annuum HOM05D000639 ORTHO05D007519 2.3e-36 155.6 95 82.1
Nitab4.5_0005420g0030 Nicotiana tabacum HOM05D000639 ORTHO05D007519 3.4e-32 141.7 100 71.0
PGSC0003DMG401003285 Solanum tuberosum HOM05D000639 ORTHO05D007519 5.8e-32 141.0 94 79.8
Nitab4.5_0002838g0160 Nicotiana tabacum HOM05D000639 ORTHO05D007519 1.7e-31 139.4 100 71.0
Sopen01g040280 Solanum pennellii HOM05D000639 ORTHO05D007519 1.7e-31 139.4 96 80.2
Solyc01g096550.3 Solanum lycopersicum HOM05D000639 ORTHO05D007519 3.2e-30 135.2 96 78.1
Peaxi162Scf00082g00019 Petunia axillaris HOM05D000639 ORTHO05D007519 1.1e-25 120.2 95 66.3
Actinidia10146 Actinidia chinensis HOM05D000639 ORTHO05D007519 1.6e-18 96.3 95 52.6
ECA234G1492 Erigeron canadensis HOM05D004621 ORTHO05D005817 4.8e-18 94.7 88 52.3
Cfa010945 Carpinus fangiana HOM05D000639 ORTHO05D007519 8.2e-18 94.0 90 52.2
DCAR_029712 Daucus carota HOM05D000639 ORTHO05D007519 1.1e-17 93.6 81 53.1
Lsat_1_v5_gn_5_78680 Lactuca sativa HOM05D004621 ORTHO05D005817 4.1e-17 91.7 74 56.8
vmacro13765 Vaccinium macrocarpon HOM05D000639 ORTHO05D007519 9.0e-17 90.5 62 69.4
Haze_03001 Corylus avellana HOM05D000639 ORTHO05D007519 3.4e-16 88.6 91 51.6
Cc03_g04310 Coffea canephora HOM05D000639 ORTHO05D007519 1.7e-15 86.3 106 44.3
QL04p019592 Quercus lobata HOM05D000639 ORTHO05D007519 2.2e-15 85.9 77 55.8
GSVIVG01036648001 Vitis vinifera HOM05D000639 ORTHO05D007519 3.8e-15 85.1 92 46.7
CiPaw.13G015500 Carya illinoinensis HOM05D000639 ORTHO05D007519 6.5e-15 84.3 84 47.6
COL.COLO4_20723 Corchorus olitorius HOM05D000639 ORTHO05D007519 6.5e-15 84.3 53 69.8
Glyma.11G157700 Glycine max HOM05D000639 ORTHO05D007519 8.5e-15 84.0 70 52.9
MSTRG.16980 Avicennia marina HOM05D000639 ORTHO05D007519 1.1e-14 83.6 84 53.6
CANSAT56G3383 Cannabis sativa HOM05D000639 ORTHO05D007519 1.1e-14 83.6 65 56.9
Migut.N01856 Erythranthe guttata HOM05D000639 ORTHO05D007519 1.1e-14 83.6 104 45.2
CSS0034880 Camellia sinensis var. sinensis HOM05D000639 ORTHO05D007519 1.4e-14 83.2 61 62.3
Glyma.04G133900 Glycine max HOM05D000639 ORTHO05D007519 1.4e-14 83.2 61 59.0
HanXRQChr10g0309811 Helianthus annuus HOM05D000639 ORTHO05D007519 4.2e-14 81.6 53 64.2
SGA_v2.0_scaffold43G16282 Striga asiatica HOM05D000639 ORTHO05D007519 4.2e-14 81.6 89 50.6
PGR031G3760 Punica granatum HOM05D000639 ORTHO05D007519 1.2e-13 80.1 61 57.4
Thecc.10G145300 Theobroma cacao HOM05D000639 ORTHO05D007519 1.2e-13 80.1 54 68.5
Duzib128G0348 Durio zibethinus HOM05D000639 ORTHO05D007519 2.1e-13 79.3 55 67.3
unitig_0.g2299 Utricularia gibba HOM05D000639 ORTHO05D007519 2.1e-13 79.3 92 45.7
Aa31LG3G6490 Aethionema arabicum HOM05D000639 ORTHO05D007519 2.7e-13 79.0 91 47.3
Medtr3g013960 Medicago truncatula HOM05D000639 ORTHO05D007519 2.7e-13 79.0 70 51.4
Psat5g222040 Pisum sativum HOM05D000639 ORTHO05D007519 3.6e-13 78.6 60 58.3
SalBow6G5029 Salvia bowleyana HOM05D000639 ORTHO05D007519 3.6e-13 78.6 87 44.8
TAR633G0611 Trochodendron aralioides HOM05D000639 ORTHO05D007519 3.6e-13 78.6 61 60.7
TAR633G2471 Trochodendron aralioides HOM05D000639 ORTHO05D007519 3.6e-13 78.6 61 60.7
arahy.Tifrunner.gnm1.ann1.P73KK2 Arachis hypogaea HOM05D000639 ORTHO05D007519 6.1e-13 77.8 60 58.3
Ciclev10000650m.g Citrus clementina HOM05D000639 ORTHO05D007519 6.1e-13 77.8 61 55.7
Dinv32012 Davidia involucrata HOM05D000639 ORTHO05D007519 6.1e-13 77.8 51 64.7
Sc10g0004550 Simmondsia chinensis HOM05D000639 ORTHO05D007519 6.1e-13 77.8 81 46.9
arahy.Tifrunner.gnm1.ann1.H9Y2LD Arachis hypogaea HOM05D000639 ORTHO05D007519 7.9e-13 77.4 54 63.0
EL10Ac2g02719 Beta vulgaris HOM05D000639 ORTHO05D007519 7.9e-13 77.4 85 47.1
Nn7g36776 Nelumbo nucifera HOM05D000639 ORTHO05D007519 7.9e-13 77.4 61 55.7
MELO3C012491.2 Cucumis melo HOM05D000639 ORTHO05D007519 1.4e-12 76.6 61 55.7
CsaV3_5G036920 Cucumis sativus L. HOM05D000639 ORTHO05D007519 1.4e-12 76.6 61 55.7
SGA_v2.0_scaffold232G43485 Striga asiatica HOM05D000639 ORTHO05D007519 1.4e-12 76.6 84 47.6
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 1.8e-12 76.3 77 49.4
Cpa.g.sc169.35 Carica papaya HOM05D000639 ORTHO05D007519 1.8e-12 76.3 58 60.3
TAR636G2666 Trochodendron aralioides HOM05D000639 ORTHO05D007519 2.3e-12 75.9 61 57.4
Lalb_Chr25g0281741 Lupinus albus HOM05D000639 ORTHO05D007519 3.0e-12 75.5 64 51.6
VMungo1080G1346 Vigna mungo HOM05D000639 ORTHO05D007519 3.0e-12 75.5 56 58.9
BcaB04g18688 Brassica carinata HOM05D000639 ORTHO05D007519 5.1e-12 74.7 93 43.0
FAN10G4100 Fragaria x ananassa HOM05D000639 ORTHO05D007519 5.1e-12 74.7 56 57.1
MD07G1046100 Malus domestica HOM05D000639 ORTHO05D007519 5.1e-12 74.7 54 61.1
BolC5t34218H Brassica oleracea HOM05D000639 ORTHO05D007519 6.7e-12 74.3 86 43.0
Potri.001G030200 Populus trichocarpa HOM05D000639 ORTHO05D007519 6.7e-12 74.3 93 41.9
THA.LOC104799324 Tarenaya hassleriana HOM05D000639 ORTHO05D007519 8.8e-12 73.9 102 45.1
A05p37090 Brassica napus HOM05D000639 ORTHO05D007519 1.1e-11 73.6 93 38.7
BraA05t22506Z Brassica rapa HOM05D000639 ORTHO05D007519 1.1e-11 73.6 93 38.7
TWI15G0515 Tripterygium wilfordii HOM05D000639 ORTHO05D007519 1.1e-11 73.6 70 50.0
C05p55520 Brassica napus HOM05D000639 ORTHO05D007519 1.5e-11 73.2 86 41.9
AUR62032569 Chenopodium quinoa HOM05D000639 ORTHO05D007519 1.5e-11 73.2 86 39.5
FAN03G1836 Fragaria x ananassa HOM05D000639 ORTHO05D007519 2.0e-11 72.8 56 55.4
Gorai.009G298900 Gossypium raimondii HOM05D000639 ORTHO05D007519 2.0e-11 72.8 53 62.3
MBI19_g20786_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D007519 2.0e-11 72.8 71 45.1
Phvul.005G024700 Phaseolus vulgaris HOM05D000639 ORTHO05D007519 2.0e-11 72.8 54 57.4
TPR.G1436 Trifolium pratense HOM05D000639 ORTHO05D007519 2.0e-11 72.8 58 53.4
Gohir.D05G284300 Gossypium hirsutum HOM05D000639 ORTHO05D007519 3.3e-11 72.0 51 64.7
Thhalv10020338m.g Eutrema salsugineum HOM05D000639 ORTHO05D007519 4.3e-11 71.6 91 46.2
MBI19_g36133_MAGBIO Magnolia biondii HOM05D000639 ORTHO05D007519 5.7e-11 71.2 71 47.9
PSO339G5515 Papaver somniferum HOM05D000639 ORTHO05D007519 7.4e-11 70.9 87 43.7
FvH4_7g03650 Fragaria vesca HOM05D000639 ORTHO05D007519 9.7e-11 70.5 56 53.6
FAN06G0539 Fragaria x ananassa HOM05D000639 ORTHO05D007519 9.7e-11 70.5 56 53.6
Hund13389 Selenicereus undatus HOM05D000639 ORTHO05D007519 9.7e-11 70.5 48 60.4
Zm00001eb307260 Zea mays HOM05D000639 ORTHO05D007519 9.7e-11 70.5 52 59.6
BraA03t12910Z Brassica rapa HOM05D000639 ORTHO05D007519 1.3e-10 70.1 82 50.0
CDE04G3691 Ceratophyllum demersum HOM05D000639 ORTHO05D007519 1.3e-10 70.1 55 56.4
Prupe.2G042600 Prunus persica HOM05D000639 ORTHO05D007519 1.3e-10 70.1 51 58.8
C03p45550 Brassica napus HOM05D000639 ORTHO05D007519 1.7e-10 69.7 87 43.7
A03p37560 Brassica napus HOM05D000639 ORTHO05D007519 2.2e-10 69.3 80 50.0
Os07g0640000 Oryza sativa ssp. japonica HOM05D000639 ORTHO05D007519 2.8e-10 68.9 52 57.7
Carub.0003s1163 Capsella rubella HOM05D000639 ORTHO05D007519 4.8e-10 68.2 54 57.4
Gohir.A05G283300 Gossypium hirsutum HOM05D000639 ORTHO05D007519 4.8e-10 68.2 53 58.5
Sabra01G0021700 Salix brachista HOM05D000639 ORTHO05D007519 4.8e-10 68.2 93 44.1
BcaC01g04056 Brassica carinata HOM05D000639 ORTHO05D007519 6.3e-10 67.8 80 46.2
AUR62031686 Chenopodium quinoa HOM05D000639 ORTHO05D007519 6.3e-10 67.8 86 37.2
Aqoxy1G00391 Aquilegia oxysepala HOM05D000639 ORTHO05D007519 8.2e-10 67.4 60 50.0
ATR1096G043 Amborella trichopoda HOM05D000639 ORTHO05D007519 1.1e-09 67.0 59 49.2
Manes.04G156800 Manihot esculenta HOM05D000639 ORTHO05D007519 1.1e-09 67.0 83 42.2
Sp3g10490 Schrenkiella parvula HOM05D000639 ORTHO05D007519 1.1e-09 67.0 54 57.4
Ah.10g029870 Amaranthus hybridus HOM05D000639 ORTHO05D007519 1.8e-09 66.2 75 42.7
BolC3t16832H Brassica oleracea HOM05D000639 ORTHO05D007519 1.8e-09 66.2 82 47.6
AL3G23930 Arabidopsis lyrata HOM05D000639 ORTHO05D007519 3.1e-09 65.5 99 44.4
C09p27390 Brassica napus HOM05D000639 ORTHO05D007519 3.1e-09 65.5 86 43.0
CARHR086820 Cardamine hirsuta HOM05D000639 ORTHO05D007519 4.1e-09 65.1 93 45.2
CDE02G3921 Ceratophyllum demersum HOM05D000639 ORTHO05D007519 5.3e-09 64.7 79 43.0
Mapoly0032s0165 Marchantia polymorpha HOM05D000639 ORTHO05D007519 5.3e-09 64.7 58 50.0
RcHm_v2.0_Chr1g0326421 Rosa chinensis HOM05D000639 ORTHO05D007519 5.3e-09 64.7 56 48.2
CBR_g3764 Chara braunii HOM05D000639 ORTHO05D007519 6.9e-09 64.3 50 54.0
AT3G12270 Arabidopsis thaliana HOM05D000639 ORTHO05D007519 1.2e-08 63.5 95 42.1
PSO384G1239 Papaver somniferum HOM05D000639 ORTHO05D007519 1.2e-08 63.5 87 40.2
SEGI_34036 Sequoiadendron giganteum HOM05D000639 ORTHO05D007519 1.2e-08 63.5 51 52.9
ClCG05G026980 Citrullus lanatus HOM05D000639 ORTHO05D007519 4.5e-08 61.6 61 45.9
HPP92_001699 Vanilla planifolia HOM05D000639 ORTHO05D007519 1.0e-07 60.5 60 48.3
Sed0017460 Sechium edule HOM05D000639 ORTHO05D007519 1.3e-07 60.1 61 44.3
Pp3c22_9680 Physcomitrium patens HOM05D000639 ORTHO05D007519 1.1e-06 57.0 85 36.5
Lj3g0017509 Lotus japonicus HOM05D000639 ORTHO05D007519 3.2e-06 55.5 72 38.9


User provided reference genes

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