Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 8.7e-100 367.1 199 100.0
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 8.7e-84 313.9 202 85.1
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 5.6e-83 311.2 202 83.7
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.6e-82 309.7 202 83.2
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.1e-78 297.0 201 79.6
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.2e-72 276.9 188 79.3
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.5e-72 276.6 198 76.3
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 2.6e-64 249.2 197 64.0
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.0e-63 247.3 169 74.0
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.0e-63 247.3 164 73.8
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.2e-63 246.1 169 71.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.2e-63 246.1 169 74.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.0e-63 245.0 170 74.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 6.5e-63 244.6 164 74.4
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.5e-63 244.2 170 74.7
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 8.5e-63 244.2 164 73.8
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.1e-62 243.8 174 71.8
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.9e-62 243.0 169 72.8
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.5e-62 242.7 169 73.4
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.2e-61 240.4 197 64.5
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.2e-61 240.4 169 73.4
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.6e-61 240.0 167 71.9
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.6e-61 240.0 169 72.2
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 3.6e-61 238.8 164 74.4
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 4.6e-61 238.4 189 63.0
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 7.9e-61 237.7 168 70.2
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 7.9e-61 237.7 169 70.4
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.0e-60 237.3 169 71.0
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.4e-60 236.9 169 71.6
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.4e-60 236.9 169 70.4
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.8e-60 236.5 169 69.8
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.3e-60 236.1 169 71.0
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.9e-60 235.3 169 70.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 6.7e-60 234.6 167 70.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.8e-60 234.2 164 73.2
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 8.8e-60 234.2 169 70.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 8.8e-60 234.2 166 68.7
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.1e-59 233.8 169 70.4
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.1e-59 233.8 169 68.6
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.1e-59 233.8 187 63.6
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.5e-59 233.4 169 70.4
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 2.6e-59 232.6 169 69.8
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 3.3e-59 232.3 169 67.5
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.3e-59 232.3 189 65.6
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 7.4e-59 231.1 166 68.1
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 9.7e-59 230.7 169 70.4
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.3e-58 230.3 186 60.2
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.3e-58 230.3 194 58.2
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.3e-58 230.3 167 66.5
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.7e-58 229.9 201 64.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.2e-58 229.6 170 71.2
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.2e-58 229.6 168 66.7
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.8e-58 229.2 169 71.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 4.8e-58 228.4 169 67.5
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 4.8e-58 228.4 169 66.3
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 4.8e-58 228.4 169 68.0
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 8.2e-58 227.6 168 67.3
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.1e-57 227.3 169 64.5
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.1e-57 227.3 166 66.9
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.4e-57 226.9 168 66.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.8e-57 226.5 165 68.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.8e-57 226.5 192 61.5
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.8e-57 226.5 166 65.1
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.4e-57 226.1 169 66.9
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.9e-57 224.6 169 67.5
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 9.1e-57 224.2 172 66.9
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.5e-56 223.4 169 68.0
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 2.0e-56 223.0 167 67.7
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 4.5e-56 221.9 169 65.7
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 4.5e-56 221.9 166 64.5
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.9e-56 221.5 169 61.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 5.9e-56 221.5 168 65.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 7.7e-56 221.1 166 65.7
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 7.7e-56 221.1 167 64.7
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.0e-55 220.7 168 65.5
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.0e-55 220.7 169 67.5
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.3e-55 220.3 217 59.9
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.7e-55 219.9 169 65.1
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 2.2e-55 219.5 169 65.7
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.9e-55 219.2 168 63.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 2.9e-55 219.2 177 63.3
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 2.9e-55 219.2 177 63.3
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 3.8e-55 218.8 194 62.4
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 3.8e-55 218.8 166 66.3
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 8.5e-55 217.6 169 66.3
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 8.5e-55 217.6 169 66.3
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-54 217.2 169 66.3
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-54 217.2 169 66.3
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-54 217.2 167 65.9
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.1e-54 217.2 150 70.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.4e-54 216.9 169 63.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.9e-54 216.5 168 62.5
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.5e-54 216.1 166 65.7
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.5e-54 216.1 169 66.3
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 3.2e-54 215.7 168 62.5
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 4.2e-54 215.3 166 65.1
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 5.5e-54 214.9 150 70.0
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 9.4e-54 214.2 169 66.3
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.6e-53 213.4 163 65.6
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.6e-53 213.4 163 65.6
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.1e-53 213.0 178 62.9
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.7e-53 212.6 221 52.9
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.7e-53 212.6 168 66.1
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 4.7e-53 211.8 178 61.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.1e-53 211.5 164 67.1
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.0e-52 210.7 169 65.7
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.3e-52 209.5 150 68.0
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 8.8e-52 207.6 176 59.7
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 8.8e-52 207.6 164 61.0
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.5e-51 206.8 150 66.7
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.0e-51 206.5 175 60.6
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 4.4e-51 205.3 175 60.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.7e-50 203.4 164 62.8
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 3.1e-49 199.1 170 61.8
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.1e-49 199.1 169 60.4
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.1e-49 199.1 189 59.8
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.6e-48 196.1 163 57.7
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.2e-47 193.0 205 51.7
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.2e-47 193.0 169 60.4
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.2e-47 193.0 145 64.8
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-46 190.7 163 56.4
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.2e-45 187.2 141 65.2
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 3.6e-45 185.7 160 60.0
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 6.1e-45 184.9 167 59.3
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 5.2e-44 181.8 150 58.7
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 3.1e-41 172.6 185 53.5
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 2.7e-40 169.5 152 56.6
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 6.5e-39 164.9 163 53.4
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 6.5e-39 164.9 193 48.7
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.0e-36 156.0 168 49.4
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.0e-36 156.0 171 47.4
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.6e-35 152.9 165 50.9
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.8e-34 148.7 125 58.4
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.7e-31 140.2 99 72.7
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.8e-31 139.0 103 69.9
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 7.2e-30 134.8 100 72.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 8.8e-28 127.9 141 49.6
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.4e-27 125.9 84 71.4
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 3.4e-27 125.9 87 69.0
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.3e-26 124.0 83 69.9
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.4e-25 120.6 103 61.2
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 2.4e-25 119.8 83 68.7
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 5.6e-22 108.6 71 69.0
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.2e-21 107.5 85 65.9
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.0e-20 104.4 71 66.2
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 6.8e-20 101.7 76 71.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.3e-18 97.4 136 44.9
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.7e-18 95.9 82 59.8
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.3e-15 86.7 68 57.4
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 6.2e-13 78.6 125 36.8
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 2.6e-11 73.2 63 63.5
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.9e-10 69.7 96 40.6
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.3e-07 60.8 49 65.3
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.0e-07 58.9 42 69.0
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 9.5e-06 54.7 39 59.0
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 9.5e-06 54.7 35 71.4


User provided reference genes

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