Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.1e-104 383.3 190 100.0
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.9e-100 367.9 190 95.8
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.4e-99 366.3 190 95.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.4e-99 366.3 190 95.3
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.2e-96 354.0 187 92.5
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.6e-80 301.2 190 75.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 7.3e-80 300.8 190 74.2
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.3e-78 295.8 188 75.0
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.1e-78 295.4 188 75.0
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.8e-78 294.3 189 73.5
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.5e-77 293.1 190 75.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-77 293.1 188 76.1
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 9.8e-77 290.4 173 78.0
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.8e-77 290.4 188 76.1
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.3e-76 290.0 187 72.7
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.7e-76 289.7 190 78.4
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.2e-76 289.3 190 72.1
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 4.9e-76 288.1 186 74.7
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-75 287.0 187 73.3
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.4e-75 286.6 172 79.7
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.4e-75 286.6 189 73.5
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.2e-75 285.4 190 71.6
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.2e-75 285.4 191 73.3
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.2e-75 285.4 185 72.4
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.2e-75 285.4 184 74.5
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 9.2e-75 283.9 191 71.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.2e-74 283.5 185 73.0
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.2e-74 283.5 186 72.6
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.2e-74 283.5 186 72.6
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.1e-74 282.7 191 70.7
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 3.5e-74 282.0 191 71.7
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.5e-74 282.0 164 81.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 4.6e-74 281.6 191 70.7
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 4.6e-74 281.6 184 70.1
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 6.0e-74 281.2 191 70.7
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 6.0e-74 281.2 191 70.7
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 6.0e-74 281.2 191 69.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 7.8e-74 280.8 178 72.5
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.0e-73 280.4 191 70.7
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.0e-73 280.4 175 77.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.3e-73 280.0 191 70.2
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.7e-73 279.6 188 71.3
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.7e-73 279.6 190 70.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.7e-73 279.6 151 89.4
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.9e-73 278.5 191 71.2
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.1e-73 278.1 188 70.2
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 5.1e-73 278.1 190 71.6
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.6e-73 277.7 176 73.9
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 8.6e-73 277.3 173 76.9
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 8.6e-73 277.3 175 74.3
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 8.6e-73 277.3 175 74.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.1e-72 276.9 189 69.8
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-72 276.9 175 73.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-72 276.9 175 73.1
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.1e-72 276.9 173 72.8
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.1e-72 276.9 173 75.1
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.5e-72 276.6 190 69.5
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.5e-72 276.6 190 67.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.3e-72 275.4 175 75.4
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.2e-71 273.5 188 72.3
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.2e-71 273.5 173 75.1
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.6e-71 273.1 185 69.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.8e-71 272.3 185 68.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.2e-71 271.2 173 75.1
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.2e-71 271.2 173 75.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 6.2e-71 271.2 185 68.6
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 8.1e-71 270.8 173 75.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.8e-70 269.6 187 69.5
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.3e-70 269.2 175 71.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.1e-70 268.9 174 73.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 3.1e-70 268.9 173 73.4
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 5.2e-70 268.1 188 70.2
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.2e-69 266.9 173 74.0
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 2.0e-69 266.2 188 69.1
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.6e-69 265.8 182 69.8
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 5.8e-69 264.6 159 79.9
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.2e-68 262.7 188 66.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.2e-68 262.7 173 71.1
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.7e-68 261.9 187 69.0
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 4.9e-68 261.5 158 80.4
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.4e-68 260.8 165 72.1
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.1e-67 260.4 175 70.3
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.4e-67 259.2 182 67.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 7.1e-67 257.7 184 67.4
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 9.2e-67 257.3 190 66.3
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.1e-66 256.1 160 76.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.1e-66 256.1 182 67.6
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.1e-66 256.1 182 68.1
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.5e-66 255.4 182 67.0
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 4.6e-66 255.0 164 71.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.0e-66 254.6 173 68.8
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 3.0e-65 252.3 169 69.2
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.9e-65 251.9 173 67.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 5.1e-65 251.5 162 72.2
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 8.6e-65 250.8 164 71.3
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.1e-64 250.4 169 67.5
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 3.3e-64 248.8 172 70.3
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.3e-64 248.8 173 67.1
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.6e-64 248.1 164 71.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 7.3e-64 247.7 184 66.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.6e-63 246.5 163 71.2
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.6e-63 246.5 161 70.8
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.1e-63 246.1 170 66.5
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.8e-63 245.7 174 66.1
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.6e-63 245.4 164 68.9
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.6e-63 245.4 164 68.9
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 6.2e-63 244.6 170 68.8
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 6.2e-63 244.6 168 66.7
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.1e-62 243.8 188 63.3
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.4e-62 243.4 164 69.5
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.4e-62 242.7 171 67.3
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.4e-62 242.7 170 68.2
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 4.0e-62 241.9 163 69.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 8.9e-62 240.7 164 68.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.2e-61 240.4 170 66.5
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.0e-61 239.6 189 65.6
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.4e-61 238.4 168 67.9
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 2.9e-60 235.7 173 65.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.8e-60 235.3 163 68.1
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.4e-60 234.2 160 66.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 8.4e-60 234.2 134 79.1
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-59 233.8 169 65.1
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.9e-59 233.0 168 66.7
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.4e-59 231.5 169 64.5
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 5.4e-59 231.5 168 62.5
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 5.4e-59 231.5 173 63.0
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 5.4e-59 231.5 165 63.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 9.3e-59 230.7 173 63.0
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.6e-58 229.9 157 66.9
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.1e-58 229.6 165 67.3
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-58 229.6 165 67.3
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 6.0e-58 228.0 169 64.5
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.0e-58 228.0 168 65.5
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.9e-57 225.3 176 61.4
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 3.9e-57 225.3 173 62.4
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 5.1e-57 224.9 164 65.2
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.3e-55 220.3 160 63.1
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.6e-55 219.9 134 74.6
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.4e-54 216.9 159 61.6
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.1e-54 215.7 182 60.4
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.6e-53 212.6 180 56.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.3e-52 210.3 165 65.5
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-52 209.5 161 60.2
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.8e-52 208.8 165 59.4
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.9e-51 206.5 190 57.9
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 4.2e-51 205.3 164 57.9
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-50 203.8 188 54.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.1e-50 203.0 155 63.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 5.6e-48 194.9 158 60.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.3e-47 193.7 178 53.9
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.8e-46 189.9 164 57.3
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.9e-46 188.0 160 63.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.5e-45 186.8 144 66.7
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.4e-45 185.7 137 66.4
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 6.4e-44 181.4 176 53.4
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.1e-43 180.6 169 55.0
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 3.2e-43 179.1 141 56.7
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.5e-43 178.3 128 67.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 6.7e-41 171.4 131 62.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.1e-39 166.4 169 50.9
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.8e-39 165.2 169 50.9
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 8.1e-39 164.5 129 59.7
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.7e-33 144.4 99 68.7
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.5e-32 143.7 116 61.2
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.5e-32 142.9 94 69.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 3.3e-32 142.5 91 67.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.3e-32 142.1 93 71.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.4e-29 132.5 150 42.0
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.4e-29 132.5 89 67.4
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.7e-26 122.9 175 42.9
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.2e-23 113.2 73 69.9
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.4e-17 94.0 84 53.6
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.3e-16 89.0 66 69.7
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.1e-11 74.3 107 40.2
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.4e-11 73.9 36 88.9
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-11 73.9 51 64.7
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.5e-11 73.2 174 31.0
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.4e-11 71.2 36 86.1
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 5.1e-09 65.5 184 27.2
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-07 60.1 48 54.2
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.1e-06 57.8 80 38.8


User provided reference genes

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