Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G995.6 Capsicum annuum HOM05D003060 ORTHO05D034007 5.7e-98 360.9 183 100.0
PGSC0003DMG402024702 Solanum tuberosum HOM05D003060 ORTHO05D001716 8.3e-65 250.8 182 73.1
Nitab4.5_0002344g0090 Nicotiana tabacum HOM05D003060 ORTHO05D001716 6.0e-63 244.6 182 72.0
Peaxi162Scf00037g00924 Petunia axillaris HOM05D003060 ORTHO05D001716 1.5e-61 240.0 182 70.9
Nitab4.5_0004754g0020 Nicotiana tabacum HOM05D003060 ORTHO05D001716 2.8e-60 235.7 183 69.4
Sopen01g042920 Solanum pennellii HOM05D003060 ORTHO05D001716 2.7e-55 219.2 182 66.5
Solyc01g099360.3 Solanum lycopersicum HOM05D003060 ORTHO05D001716 6.2e-52 208.0 183 65.0
Sopen11g019980 Solanum pennellii HOM05D003060 ORTHO05D034007 7.1e-40 167.9 152 62.5
Solyc11g044430.1 Solanum lycopersicum HOM05D003060 ORTHO05D034007 4.8e-28 128.6 107 69.2
Thecc.08G198500 Theobroma cacao HOM05D003060 ORTHO05D001716 1.4e-19 100.5 161 42.2
Manes.09G169200 Manihot esculenta HOM05D003060 ORTHO05D001716 2.0e-18 96.7 168 44.0
Cfa006614 Carpinus fangiana HOM05D003060 ORTHO05D001716 5.8e-18 95.1 200 37.5
Potri.005G026800 Populus trichocarpa HOM05D003060 ORTHO05D001716 5.8e-18 95.1 208 36.5
Potri.013G018700 Populus trichocarpa HOM05D003060 ORTHO05D001716 5.8e-18 95.1 169 40.8
TWI36G0905 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 7.6e-18 94.7 165 40.6
arahy.Tifrunner.gnm1.ann1.U2HTAJ Arachis hypogaea HOM05D003060 ORTHO05D001716 2.9e-17 92.8 190 37.4
arahy.Tifrunner.gnm1.ann1.LGT5H6 Arachis hypogaea HOM05D003060 ORTHO05D001716 3.8e-17 92.4 190 37.4
Duzib211G0658 Durio zibethinus HOM05D003060 ORTHO05D001716 4.9e-17 92.0 163 40.5
Gorai.009G287300 Gossypium raimondii HOM05D003060 ORTHO05D001716 4.9e-17 92.0 161 40.4
QL03p012691 Quercus lobata HOM05D003060 ORTHO05D001716 4.9e-17 92.0 212 36.8
Gohir.D05G274200 Gossypium hirsutum HOM05D003060 ORTHO05D001716 1.9e-16 90.1 166 41.0
CiPaw.08G163000 Carya illinoinensis HOM05D003060 ORTHO05D001716 3.2e-16 89.4 190 36.8
DCAR_022153 Daucus carota HOM05D003060 ORTHO05D001716 4.2e-16 89.0 205 35.6
Haze_04161 Corylus avellana HOM05D003060 ORTHO05D001716 5.5e-16 88.6 199 36.7
Lj1g0012568 Lotus japonicus HOM05D003060 ORTHO05D001716 5.5e-16 88.6 165 43.0
Actinidia24646 Actinidia chinensis HOM05D003060 ORTHO05D001716 9.3e-16 87.8 202 35.1
Duzib177G0733 Durio zibethinus HOM05D003060 ORTHO05D001716 9.3e-16 87.8 202 36.6
Glyma.10G152700 Glycine max HOM05D003060 ORTHO05D001716 9.3e-16 87.8 163 41.7
TWI56G0319 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 9.3e-16 87.8 162 39.5
Glyma.20G235700 Glycine max HOM05D003060 ORTHO05D001716 1.6e-15 87.0 155 40.0
Hma1.2p1_1212F.1_g267400 Hydrangea macrophylla HOM05D003060 ORTHO05D001716 2.7e-15 86.3 168 36.9
Duzib116G0105 Durio zibethinus HOM05D003060 ORTHO05D001716 3.5e-15 85.9 204 36.8
CANSAT54G0820 Cannabis sativa HOM05D003060 ORTHO05D001716 4.6e-15 85.5 174 36.8
COL.COLO4_05531 Corchorus olitorius HOM05D003060 ORTHO05D001716 1.0e-14 84.3 179 36.3
Psat0s545g0040 Pisum sativum HOM05D003060 ORTHO05D001716 1.3e-14 84.0 204 35.8
Sabra05G0032100 Salix brachista HOM05D003060 ORTHO05D001716 1.8e-14 83.6 204 35.8
Actinidia19785 Actinidia chinensis HOM05D003060 ORTHO05D001716 2.3e-14 83.2 202 36.1
Phvul.006G090511 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 3.0e-14 82.8 204 36.3
Glyma.19G234300 Glycine max HOM05D003060 ORTHO05D001716 3.9e-14 82.4 170 37.6
Phvul.006G090600 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 3.9e-14 82.4 204 36.3
Sabra13G0021300 Salix brachista HOM05D003060 ORTHO05D001716 3.9e-14 82.4 170 38.2
Migut.N01988 Erythranthe guttata HOM05D003060 ORTHO05D001716 5.1e-14 82.0 161 39.1
FvH4_6g06310 Fragaria vesca HOM05D003060 ORTHO05D001716 8.7e-14 81.3 222 34.7
VMungo0540G1887 Vigna mungo HOM05D003060 ORTHO05D001716 1.1e-13 80.9 204 35.3
DCAR_003342 Daucus carota HOM05D003060 ORTHO05D001716 1.5e-13 80.5 207 33.3
Atru.chr2.14 Acer truncatum HOM05D003060 ORTHO05D001716 1.9e-13 80.1 159 37.1
FAN14G2973 Fragaria x ananassa HOM05D003060 ORTHO05D001716 1.9e-13 80.1 222 34.7
VMungo0540G0889 Vigna mungo HOM05D003060 ORTHO05D001716 1.9e-13 80.1 204 35.3
FAN09G4310 Fragaria x ananassa HOM05D003060 ORTHO05D001716 2.5e-13 79.7 183 37.7
MSTRG.20426 Avicennia marina HOM05D003060 ORTHO05D001716 7.4e-13 78.2 198 34.3
Ca_05807_v3 Cicer arietinum L. HOM05D003060 ORTHO05D001716 7.4e-13 78.2 205 34.1
Lalb_Chr18g0045701 Lupinus albus HOM05D003060 ORTHO05D001716 9.7e-13 77.8 168 34.5
TPR.G33216 Trifolium pratense HOM05D003060 ORTHO05D001716 1.3e-12 77.4 206 34.5
TWI12G1080 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 1.3e-12 77.4 166 37.3
Cpa.g.sc48.79 Carica papaya HOM05D003060 ORTHO05D001716 1.6e-12 77.0 185 36.2
Cc00_g10500 Coffea canephora HOM05D003060 ORTHO05D001716 2.8e-12 76.3 191 34.0
Lalb_Chr15g0077301 Lupinus albus HOM05D003060 ORTHO05D001716 3.7e-12 75.9 198 33.3
FAN05G5493 Fragaria x ananassa HOM05D003060 ORTHO05D001716 8.2e-12 74.7 222 32.9
FAN02G1847 Fragaria x ananassa HOM05D003060 ORTHO05D001716 1.4e-11 73.9 223 32.7
Medtr7g113180 Medicago truncatula HOM05D003060 ORTHO05D001716 1.4e-11 73.9 206 35.4
Ciclev10000070m.g Citrus clementina HOM05D003060 ORTHO05D001716 1.8e-11 73.6 211 34.6
Lj5g0001145 Lotus japonicus HOM05D003060 ORTHO05D001716 2.4e-11 73.2 173 37.0
Aqoxy2G03022 Aquilegia oxysepala HOM05D003060 ORTHO05D001716 4.1e-11 72.4 185 33.0
MELO3C004230.2 Cucumis melo HOM05D003060 ORTHO05D001716 5.3e-11 72.0 187 32.6
PGR031G3073 Punica granatum HOM05D003060 ORTHO05D001716 5.3e-11 72.0 180 31.1
CsaV3_2G006550 Cucumis sativus L. HOM05D003060 ORTHO05D001716 6.9e-11 71.6 185 32.4
Sed0010373 Sechium edule HOM05D003060 ORTHO05D001716 9.0e-11 71.2 151 33.8
Sed0012843 Sechium edule HOM05D003060 ORTHO05D001716 9.0e-11 71.2 182 33.5
MSTRG.27986 Avicennia marina HOM05D003060 ORTHO05D001716 1.2e-10 70.9 186 34.9
MBI19_g13125_MAGBIO Magnolia biondii HOM05D003060 ORTHO05D001716 2.0e-10 70.1 174 36.2
Aa31LG11G9390 Aethionema arabicum HOM05D003060 ORTHO05D001716 2.6e-10 69.7 173 35.3
MD12G1216400 Malus domestica HOM05D003060 ORTHO05D001716 4.5e-10 68.9 209 34.0
vmacro04969 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 4.5e-10 68.9 230 31.7
HanXRQChr11g0339461 Helianthus annuus HOM05D003060 ORTHO05D001716 1.3e-09 67.4 213 31.5
AT5G27650 Arabidopsis thaliana HOM05D003060 ORTHO05D001716 1.7e-09 67.0 171 35.1
TAR633G1311 Trochodendron aralioides HOM05D003060 ORTHO05D001716 6.5e-09 65.1 187 34.8
AUR62000787 Chenopodium quinoa HOM05D003060 ORTHO05D001716 8.5e-09 64.7 179 34.1
AUR62005180 Chenopodium quinoa HOM05D003060 ORTHO05D001716 8.5e-09 64.7 179 34.1
Oeu010912.1 Olea europaea HOM05D003060 ORTHO05D001716 1.4e-08 63.9 192 32.8
Eucgr.H04503 Eucalyptus grandis HOM05D003060 ORTHO05D001716 1.9e-08 63.5 188 29.3
vmacro19622 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 1.9e-08 63.5 180 32.8
THA.LOC104802799 Tarenaya hassleriana HOM05D003060 ORTHO05D001716 5.5e-08 62.0 160 31.9
AL3G15990 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 7.2e-08 61.6 157 36.9
BcaB04g19679 Brassica carinata HOM05D003060 ORTHO05D001716 7.2e-08 61.6 172 34.3
TAR636G0574 Trochodendron aralioides HOM05D003060 ORTHO05D001716 2.1e-07 60.1 215 32.6
A09p05370 Brassica napus HOM05D003060 ORTHO05D001716 2.7e-07 59.7 158 33.5
BraA09t36175Z Brassica rapa HOM05D003060 ORTHO05D001716 2.7e-07 59.7 158 33.5
Thhalv10003560m.g Eutrema salsugineum HOM05D003060 ORTHO05D001716 3.6e-07 59.3 161 34.8
DCAR_001942 Daucus carota HOM05D003060 ORTHO05D001716 1.0e-06 57.8 210 29.5
Carub.0003s0471 Capsella rubella HOM05D003060 ORTHO05D001716 1.4e-06 57.4 159 35.2
SGA_v2.0_scaffold98G29313 Striga asiatica HOM05D003060 ORTHO05D001716 1.4e-06 57.4 159 37.1
CDE08G1209 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 1.8e-06 57.0 194 32.0
GSVIVG01031118001 Vitis vinifera HOM05D003060 ORTHO05D001716 1.8e-06 57.0 176 33.5
C09p05850 Brassica napus HOM05D003060 ORTHO05D001716 2.3e-06 56.6 141 34.0
BolC9t53512H Brassica oleracea HOM05D003060 ORTHO05D001716 2.3e-06 56.6 141 34.0
Sp2g20810 Schrenkiella parvula HOM05D003060 ORTHO05D001716 2.3e-06 56.6 168 32.1
SalBow3G3371 Salvia bowleyana HOM05D003060 ORTHO05D001716 8.8e-06 54.7 178 30.3


User provided reference genes

Program Settings