Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 4.8e-105 384.4 184 100.0
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.2e-68 261.2 152 80.3
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 6.2e-68 261.2 152 80.3
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.1e-63 246.1 152 76.3
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 2.1e-63 246.1 152 76.3
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.4e-58 228.4 141 73.8
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.6e-55 219.9 142 71.1
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 2.6e-50 202.6 144 65.3
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 8.4e-49 197.6 144 61.8
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 1.1e-45 187.2 150 61.3
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 5.6e-45 184.9 150 62.0
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 8.1e-44 181.0 125 65.6
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.8e-36 155.2 96 74.0
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 7.2e-32 141.4 146 45.9
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 2.7e-31 139.4 138 48.6
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 1.3e-30 137.1 138 47.1
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.3e-30 137.1 138 47.1
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 1.3e-30 137.1 124 55.6
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 1.8e-30 136.7 148 48.0
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 3.9e-30 135.6 145 49.0
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 5.1e-30 135.2 132 48.5
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 1.1e-29 134.0 138 48.6
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.5e-29 132.9 152 45.4
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.5e-29 132.9 145 49.7
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.3e-29 132.5 132 50.8
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 3.3e-29 132.5 133 48.9
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 3.3e-29 132.5 149 45.6
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.3e-29 132.5 149 45.6
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.3e-29 132.5 149 45.6
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 4.3e-29 132.1 134 47.8
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 7.4e-29 131.3 117 50.4
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 7.4e-29 131.3 96 61.5
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 9.7e-29 131.0 96 64.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.3e-28 130.6 129 49.6
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.6e-28 130.2 146 47.3
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 1.6e-28 130.2 139 46.8
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 6.3e-28 128.3 135 45.9
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 8.2e-28 127.9 146 46.6
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 8.2e-28 127.9 137 49.6
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.4e-27 127.1 132 45.5
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.4e-27 127.1 134 43.3
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 1.4e-27 127.1 133 45.1
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 1.8e-27 126.7 133 51.1
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.8e-27 126.7 140 46.4
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 3.1e-27 125.9 146 46.6
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 6.9e-27 124.8 128 48.4
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 9.0e-27 124.4 137 45.3
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 9.0e-27 124.4 133 50.4
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 9.0e-27 124.4 137 46.0
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 2.6e-26 122.9 119 47.9
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 3.4e-26 122.5 140 41.4
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.0e-25 120.9 133 48.9
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 1.7e-25 120.2 124 48.4
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 1.7e-25 120.2 122 47.5
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 3.8e-25 119.0 132 45.5
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 5.0e-25 118.6 121 47.9
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.4e-24 117.1 146 41.1
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.4e-24 117.1 146 41.1
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.9e-24 116.7 131 45.8
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.5e-24 116.3 133 47.4
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 4.2e-24 115.5 153 43.1
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 7.2e-24 114.8 123 48.8
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.0e-22 110.9 136 42.6
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 3.0e-22 109.4 127 43.3
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 3.0e-22 109.4 142 43.0
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 5.1e-22 108.6 129 42.6
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 5.1e-22 108.6 114 47.4
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.5e-21 107.1 119 46.2
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.5e-21 107.1 133 42.9
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 1.5e-21 107.1 147 38.8
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 2.5e-21 106.3 150 39.3
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 3.3e-21 105.9 117 46.2
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 4.3e-21 105.5 132 43.9
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 5.7e-21 105.1 160 40.6
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 9.7e-21 104.4 128 41.4
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.3e-20 104.0 129 42.6
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 1.3e-20 104.0 149 41.6
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 2.8e-20 102.8 128 39.8
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.8e-20 102.8 133 41.4
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 3.7e-20 102.4 132 43.2
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.7e-20 102.4 129 41.9
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.4e-19 100.5 117 42.7
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 1.4e-19 100.5 133 42.1
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.8e-19 100.1 150 37.3
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.4e-19 99.8 156 41.7
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 2.4e-19 99.8 106 47.2
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 3.1e-19 99.4 113 46.0
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 9.1e-19 97.8 144 41.0
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.2e-18 97.4 116 44.8
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 2.0e-18 96.7 131 38.9
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 3.4e-18 95.9 116 44.0
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 3.4e-18 95.9 132 37.1
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 4.5e-18 95.5 130 39.2
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 4.5e-18 95.5 139 33.8
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 4.5e-18 95.5 131 38.9
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 4.5e-18 95.5 124 40.3
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 5.9e-18 95.1 123 43.9
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.3e-17 94.0 127 39.4
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.7e-17 93.6 145 34.5
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.2e-17 93.2 122 42.6
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 2.2e-17 93.2 98 43.9
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 2.9e-17 92.8 109 41.3
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.8e-17 92.4 103 43.7
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 3.8e-17 92.4 117 43.6
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 5.0e-17 92.0 132 39.4
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 1.4e-16 90.5 132 36.4
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 1.9e-16 90.1 132 38.6
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 3.2e-16 89.4 120 44.2
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 4.2e-16 89.0 113 45.1
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 5.5e-16 88.6 121 41.3
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.2e-15 87.4 145 34.5
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 2.1e-15 86.7 108 42.6
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 7.9e-15 84.7 99 46.5
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 1.0e-14 84.3 101 54.5
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.0e-14 84.3 98 44.9
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.0e-14 84.3 127 40.9
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.4e-14 84.0 58 60.3
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.8e-14 83.6 147 32.7
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 1.8e-14 83.6 117 36.8
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.8e-14 83.6 127 40.9
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 2.3e-14 83.2 117 36.8
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.0e-14 82.8 127 36.2
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 8.8e-14 81.3 100 42.0
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 4.4e-13 79.0 98 44.9
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.4e-13 78.2 145 31.0
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 7.4e-13 78.2 131 39.7
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 1.7e-12 77.0 120 35.0
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 2.8e-12 76.3 80 46.2
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 3.7e-12 75.9 137 35.0
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.7e-12 75.9 115 39.1
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.7e-12 75.9 115 39.1
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 6.3e-12 75.1 125 36.0
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 1.8e-11 73.6 126 36.5
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 7.0e-11 71.6 102 38.2
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 3.5e-10 69.3 85 38.8
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 3.8e-09 65.9 93 35.5
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.8e-09 65.9 81 40.7
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 2.7e-07 59.7 120 32.5
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 6.1e-07 58.5 117 35.9
COL.COLO4_05305 Corchorus olitorius HOM05D012915 ORTHO05D012666 1.0e-06 57.8 92 30.4
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 2.3e-06 56.6 51 52.9
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 5.2e-06 55.5 91 33.0
AL7G18270 Arabidopsis lyrata HOM05D000823 ORTHO05D000088 6.7e-06 55.1 66 37.9
SEGI_06639 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 8.8e-06 54.7 121 34.7


User provided reference genes

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