Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 0.0e+00 1107.4 550 100.0
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 6.2e-281 970.3 552 88.9
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.9e-221 772.7 528 71.8
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.4e-219 766.5 550 71.1
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 2.0e-215 752.7 539 70.9
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 7.7e-215 750.7 422 88.6
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 2.9e-214 748.8 533 69.2
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 1.9e-213 746.1 535 70.3
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 2.7e-212 742.3 541 68.4
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 2.0e-210 736.1 538 68.4
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 4.4e-210 734.9 528 67.8
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 4.8e-209 731.5 535 66.2
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.1e-208 727.2 415 86.5
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 3.5e-207 725.3 540 67.2
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 3.2e-205 718.8 528 66.5
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 3.2e-205 718.8 529 66.5
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 4.2e-205 718.4 528 67.6
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.2e-204 716.8 528 67.0
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 6.1e-204 714.5 536 64.9
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.8e-203 713.0 529 66.2
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.8e-203 713.0 407 85.7
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.3e-203 712.6 536 65.5
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 3.0e-203 712.2 528 67.6
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 3.0e-203 712.2 529 66.2
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 3.0e-203 712.2 529 66.7
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 4.4e-202 708.4 535 66.0
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 5.7e-202 708.0 542 66.2
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 7.5e-202 707.6 533 64.9
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.7e-201 706.4 536 66.8
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.8e-201 704.9 552 65.4
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 6.3e-201 704.5 528 66.9
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 8.3e-201 704.1 528 66.1
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 1.8e-200 703.0 540 65.4
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.7e-199 699.1 554 62.3
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 7.7e-199 697.6 527 66.2
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 1.0e-198 697.2 528 65.3
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.0e-198 697.2 530 65.1
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.7e-198 696.4 528 65.3
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 3.8e-198 695.3 537 64.8
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 3.3e-197 692.2 527 65.3
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 3.3e-197 692.2 537 64.8
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 9.5e-197 690.6 529 64.8
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 2.1e-196 689.5 542 62.0
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 3.6e-196 688.7 529 64.3
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 8.0e-196 687.6 527 64.5
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.4e-195 686.8 529 65.0
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.3e-195 686.0 544 63.6
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 2.0e-194 682.9 542 61.8
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 2.0e-194 682.9 528 64.2
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.6e-194 682.6 528 65.5
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 7.5e-194 681.0 528 63.1
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 9.8e-194 680.6 528 63.6
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 6.3e-193 677.9 528 64.2
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.1e-192 675.2 547 62.5
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 4.5e-191 671.8 528 63.1
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 5.0e-190 668.3 528 64.6
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 8.6e-190 667.5 591 58.9
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.5e-189 666.8 528 62.7
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 6.1e-188 661.4 536 61.8
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 6.1e-188 661.4 529 62.6
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.4e-187 660.2 533 61.5
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 3.4e-186 655.6 581 58.3
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 2.2e-185 652.9 529 62.2
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 6.4e-185 651.4 562 60.7
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 5.6e-181 638.3 534 60.5
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 5.6e-181 638.3 540 59.8
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 3.6e-180 635.6 532 62.4
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 2.3e-179 632.9 537 59.6
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 2.3e-179 632.9 534 59.7
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 3.4e-178 629.0 537 60.0
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 3.4e-178 629.0 529 60.5
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 2.2e-177 626.3 453 66.7
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.1e-176 624.0 537 59.2
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 9.2e-176 620.9 530 58.7
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 6.0e-175 618.2 555 57.5
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 4.3e-173 612.1 529 58.6
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 7.3e-173 611.3 591 55.3
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 6.2e-172 608.2 551 57.0
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 4.0e-171 605.5 504 60.9
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 6.8e-171 604.7 538 56.7
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.2e-167 594.0 435 66.7
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 2.7e-167 592.8 498 60.2
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 8.9e-163 577.8 539 55.5
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 9.9e-162 574.3 435 64.8
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 4.6e-159 565.5 536 55.2
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 7.8e-159 564.7 539 54.4
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 5.1e-158 562.0 536 54.9
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.1e-157 560.8 536 54.9
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 4.0e-155 552.4 534 54.3
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.1e-149 534.3 536 53.4
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 5.3e-147 525.4 528 52.1
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 4.3e-141 505.8 528 51.1
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.1e-139 501.1 572 50.7
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 3.2e-136 489.6 533 47.7
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.1e-132 476.9 539 47.5
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 5.8e-130 468.8 541 47.1
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 4.3e-117 426.0 505 46.7
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.2e-111 407.9 287 69.3
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 2.6e-109 400.2 353 55.5
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 9.7e-109 398.3 353 55.2
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.7e-105 387.5 558 39.8
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.5e-105 385.6 212 88.2
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.4e-102 377.9 470 43.4
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.3e-100 371.3 288 66.0
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.5e-96 357.8 589 39.6
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 8.0e-87 325.5 287 58.9
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 5.7e-85 319.3 391 45.8
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.4e-77 293.1 173 85.0
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 5.9e-74 282.7 203 71.4
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 1.1e-72 278.5 561 32.8
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.9e-72 277.7 582 33.0
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 1.7e-57 228.0 135 85.9
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.6e-57 226.1 132 86.4
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 4.7e-55 219.9 546 30.2
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 3.9e-49 200.3 150 61.3
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 3.4e-45 187.2 171 53.2
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 1.1e-43 182.2 141 62.4
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.8e-38 164.9 113 77.0
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 2.4e-38 164.5 123 61.8
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.4e-38 164.5 99 86.9
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 4.9e-28 130.2 85 77.6
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.1e-27 129.0 514 27.4
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 6.0e-26 123.2 100 63.0
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 4.2e-19 100.5 152 39.5
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.2e-13 82.4 71 59.2
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 4.5e-13 80.5 70 58.6
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 4.5e-13 80.5 75 53.3
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 8.4e-12 76.3 70 55.7
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 8.4e-12 76.3 70 55.7
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-10 72.4 113 42.5
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 1.2e-10 72.4 276 27.5
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.1e-10 71.6 68 55.9
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 4.6e-10 70.5 114 38.6
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 6.7e-09 66.6 74 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.9e-08 65.1 271 24.4
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 1.6e-07 62.0 49 55.1
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 2.8e-07 61.2 282 26.2
TWI34G1007 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 5.3e-06 57.0 276 28.3


User provided reference genes

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