Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G988.5 Capsicum annuum HOM05D001753 ORTHO05D001718 6.7e-44 180.3 89 100.0
CAN.G1222.13 Capsicum annuum HOM05D001753 ORTHO05D001718 1.2e-16 89.7 50 88.0
CAN.G1238.19 Capsicum annuum HOM05D001753 ORTHO05D001718 3.5e-16 88.2 50 88.0
CAN.G1238.18 Capsicum annuum HOM05D001753 ORTHO05D001718 8.6e-15 83.6 50 84.0
Solyc02g082520.3 Solanum lycopersicum HOM05D001753 ORTHO05D001718 2.8e-13 78.6 50 74.0
Sopen02g027210 Solanum pennellii HOM05D001753 ORTHO05D001718 6.1e-13 77.4 50 72.0
PGSC0003DMG400043788 Solanum tuberosum HOM05D001753 ORTHO05D001718 1.8e-12 75.9 50 72.0
Nitab4.5_0001467g0100 Nicotiana tabacum HOM05D001753 ORTHO05D001718 2.3e-12 75.5 50 72.0
Nitab4.5_0007782g0010 Nicotiana tabacum HOM05D001753 ORTHO05D001718 4.0e-12 74.7 50 72.0
Nitab4.5_0000467g0090 Nicotiana tabacum HOM05D001753 ORTHO05D001718 5.2e-12 74.3 50 70.0
Nitab4.5_0007782g0030 Nicotiana tabacum HOM05D001753 ORTHO05D001718 2.0e-11 72.4 50 68.0
PGSC0003DMG400017473 Solanum tuberosum HOM05D001753 ORTHO05D001718 2.0e-11 72.4 50 64.0
Peaxi162Scf00040g00315 Petunia axillaris HOM05D001753 ORTHO05D001718 3.4e-11 71.6 50 66.0
Nitab4.5_0001365g0080 Nicotiana tabacum HOM05D001753 ORTHO05D001718 4.4e-11 71.2 50 70.0
Solyc02g038811.1 Solanum lycopersicum HOM05D001753 ORTHO05D001718 4.4e-11 71.2 45 71.1
Sopen02g012550 Solanum pennellii HOM05D001753 ORTHO05D001718 4.4e-11 71.2 45 71.1
Aqoxy6G01605 Aquilegia oxysepala HOM05D001753 ORTHO05D001718 7.5e-11 70.5 50 62.0
Solyc02g082510.1 Solanum lycopersicum HOM05D001753 ORTHO05D001718 7.5e-11 70.5 50 68.0
Sopen02g027200 Solanum pennellii HOM05D001753 ORTHO05D001718 9.8e-11 70.1 50 68.0
PGSC0003DMG400035823 Solanum tuberosum HOM05D001753 ORTHO05D001718 9.8e-11 70.1 50 68.0
AUR62002054 Chenopodium quinoa HOM05D001753 ORTHO05D001718 2.2e-10 68.9 50 66.0
AUR62003741 Chenopodium quinoa HOM05D001753 ORTHO05D001718 3.7e-10 68.2 50 64.0
EL10Ac6g15048 Beta vulgaris HOM05D001753 ORTHO05D001718 1.8e-09 65.9 50 62.0
Actinidia17351 Actinidia chinensis HOM05D001753 ORTHO05D001718 2.4e-09 65.5 50 62.0
Actinidia22890 Actinidia chinensis HOM05D001753 ORTHO05D001718 2.4e-09 65.5 50 62.0
Ciclev10025677m.g Citrus clementina HOM05D001753 ORTHO05D001718 2.4e-09 65.5 50 62.0
FAN15G3118 Fragaria x ananassa HOM05D001753 ORTHO05D001718 2.4e-09 65.5 50 60.0
CAN.G1238.20 Capsicum annuum HOM05D001753 ORTHO05D001718 3.1e-09 65.1 51 64.7
FvH4_2g16760 Fragaria vesca HOM05D001753 ORTHO05D001718 3.1e-09 65.1 50 60.0
FAN24G3001 Fragaria x ananassa HOM05D001753 ORTHO05D001718 3.1e-09 65.1 50 60.0
Nitab4.5_0000495g0090 Nicotiana tabacum HOM05D001753 ORTHO05D001718 3.1e-09 65.1 50 62.0
Prupe.8G179700 Prunus persica HOM05D001753 ORTHO05D001718 3.1e-09 65.1 50 60.0
TWI75G1495 Tripterygium wilfordii HOM05D001753 ORTHO05D001718 3.1e-09 65.1 50 60.0
CAN.G354.12 Capsicum annuum HOM05D001753 ORTHO05D001718 4.1e-09 64.7 50 62.0
Cc05_g16400 Coffea canephora HOM05D001753 ORTHO05D001718 4.1e-09 64.7 50 62.0
COL.COLO4_34308 Corchorus olitorius HOM05D001753 ORTHO05D001718 4.1e-09 64.7 51 64.7
Nitab4.5_0011394g0020 Nicotiana tabacum HOM05D001753 ORTHO05D001718 4.1e-09 64.7 50 60.0
Manes.02G114800 Manihot esculenta HOM05D001753 ORTHO05D001718 5.4e-09 64.3 50 64.0
PGSC0003DMG400018670 Solanum tuberosum HOM05D001753 ORTHO05D001718 5.4e-09 64.3 50 62.0
GSVIVG01022294001 Vitis vinifera HOM05D001753 ORTHO05D001718 5.4e-09 64.3 50 60.0
Ah.02g122970 Amaranthus hybridus HOM05D001753 ORTHO05D001718 9.2e-09 63.5 50 62.0
Dinv28317 Davidia involucrata HOM05D001753 ORTHO05D001718 9.2e-09 63.5 50 58.0
Solyc03g032090.1 Solanum lycopersicum HOM05D001753 ORTHO05D001718 9.2e-09 63.5 50 60.0
Sopen03g005940 Solanum pennellii HOM05D001753 ORTHO05D001718 9.2e-09 63.5 50 60.0
Aqoxy4G01525 Aquilegia oxysepala HOM05D001753 ORTHO05D001718 1.2e-08 63.2 50 58.0
Aqoxy5G00998 Aquilegia oxysepala HOM05D001753 ORTHO05D001718 1.2e-08 63.2 50 58.0
Oeu045732.1 Olea europaea HOM05D001753 ORTHO05D001718 1.2e-08 63.2 45 64.4
Prupe.7G183800 Prunus persica HOM05D001753 ORTHO05D001718 1.2e-08 63.2 50 58.0
Aqoxy6G01846 Aquilegia oxysepala HOM05D001753 ORTHO05D001718 1.6e-08 62.8 42 66.7
Nn4g24538 Nelumbo nucifera HOM05D001753 ORTHO05D001718 1.6e-08 62.8 50 60.0
RcHm_v2.0_Chr6g0280881 Rosa chinensis HOM05D001753 ORTHO05D001718 1.6e-08 62.8 50 58.0
Peaxi162Scf00121g00244 Petunia axillaris HOM05D001753 ORTHO05D001718 2.0e-08 62.4 50 58.0
Sed0022526 Sechium edule HOM05D001753 ORTHO05D001718 2.0e-08 62.4 50 58.0
Thecc.01G004400 Theobroma cacao HOM05D001753 ORTHO05D001718 2.0e-08 62.4 50 58.0
TAR628G1495 Trochodendron aralioides HOM05D001753 ORTHO05D001718 2.0e-08 62.4 50 58.0
Aqoxy4G01818 Aquilegia oxysepala HOM05D001753 ORTHO05D001718 2.7e-08 62.0 50 56.0
CiPaw.06G115600 Carya illinoinensis HOM05D001753 ORTHO05D001718 2.7e-08 62.0 50 58.0
Dinv40196 Davidia involucrata HOM05D001753 ORTHO05D001718 3.5e-08 61.6 50 58.0
Lj9P407T41 Lonicera japonica HOM05D001753 ORTHO05D001718 3.5e-08 61.6 50 58.0
PGR042G1928 Punica granatum HOM05D001753 ORTHO05D001718 3.5e-08 61.6 48 60.4
CDE05G2093 Ceratophyllum demersum HOM05D001753 ORTHO05D001718 4.5e-08 61.2 45 66.7
Potri.004G206800 Populus trichocarpa HOM05D001753 ORTHO05D001718 4.5e-08 61.2 51 56.9
Thecc.02G145800 Theobroma cacao HOM05D001753 ORTHO05D001718 4.5e-08 61.2 51 60.8
Cpa.g.sc6.363 Carica papaya HOM05D001753 ORTHO05D001718 5.9e-08 60.8 50 60.0
Potri.005G102300 Populus trichocarpa HOM05D001753 ORTHO05D001718 5.9e-08 60.8 50 58.0
PGR042G1545 Punica granatum HOM05D001753 ORTHO05D001718 5.9e-08 60.8 48 58.3
QL11p056288 Quercus lobata HOM05D001753 ORTHO05D001718 5.9e-08 60.8 50 56.0
Sabra05G0084700 Salix brachista HOM05D001753 ORTHO05D001718 5.9e-08 60.8 50 58.0
CARHR294060 Cardamine hirsuta HOM05D001753 ORTHO05D001718 7.8e-08 60.5 49 63.3
Duzib147G1088 Durio zibethinus HOM05D001753 ORTHO05D001718 7.8e-08 60.5 50 58.0
FAN27G2288 Fragaria x ananassa HOM05D001753 ORTHO05D001718 1.0e-07 60.1 45 60.0
Atru.chr5.3534 Acer truncatum HOM05D001753 ORTHO05D001718 1.3e-07 59.7 51 58.8
CANSAT25G1279 Cannabis sativa HOM05D001753 ORTHO05D001718 1.3e-07 59.7 50 58.0
ClCG02G010510 Citrullus lanatus HOM05D001753 ORTHO05D001718 1.3e-07 59.7 48 56.2
FvH4_1g10240 Fragaria vesca HOM05D001753 ORTHO05D001718 1.3e-07 59.7 48 60.4
FAN19G0330 Fragaria x ananassa HOM05D001753 ORTHO05D001718 1.3e-07 59.7 48 60.4
Rhsim10G0194500 Rhododendron simsii HOM05D001753 ORTHO05D001718 1.3e-07 59.7 50 56.0
AT4G38250 Arabidopsis thaliana HOM05D001753 ORTHO05D001718 1.7e-07 59.3 49 59.2
CDE05G1721 Ceratophyllum demersum HOM05D001753 ORTHO05D001718 1.7e-07 59.3 45 62.2
SGA_v2.0_scaffold98G29301 Striga asiatica HOM05D001753 ORTHO05D001718 1.7e-07 59.3 52 55.8
VMungo1215G2357 Vigna mungo HOM05D001753 ORTHO05D001718 1.7e-07 59.3 50 56.0
CsaV3_6G010130 Cucumis sativus L. HOM05D001753 ORTHO05D001718 2.3e-07 58.9 43 60.5
Eucgr.G01876 Eucalyptus grandis HOM05D001753 ORTHO05D001718 2.3e-07 58.9 50 56.0
vmacro20623 Vaccinium macrocarpon HOM05D001753 ORTHO05D001718 2.3e-07 58.9 50 56.0
MELO3C013498.2 Cucumis melo HOM05D001753 ORTHO05D001718 2.9e-07 58.5 45 57.8
Lj2g0000706 Lotus japonicus HOM05D001753 ORTHO05D001718 2.9e-07 58.5 50 54.0
MBI05_g33295_MAGBIO Magnolia biondii HOM05D001753 ORTHO05D001718 2.9e-07 58.5 52 57.7
MD10G1141500 Malus domestica HOM05D001753 ORTHO05D001718 2.9e-07 58.5 50 54.0
CiPaw.05G092900 Carya illinoinensis HOM05D001753 ORTHO05D001718 3.9e-07 58.2 50 54.0
CsaV3_7G001900 Cucumis sativus L. HOM05D001753 ORTHO05D001718 3.9e-07 58.2 50 54.0
Duzib248G0393 Durio zibethinus HOM05D001753 ORTHO05D001718 3.9e-07 58.2 45 64.4
ATR0807G201 Amborella trichopoda HOM05D001753 ORTHO05D001718 5.0e-07 57.8 50 58.0
ClCG02G003420 Citrullus lanatus HOM05D001753 ORTHO05D001718 5.0e-07 57.8 50 54.0
FAN23G0128 Fragaria x ananassa HOM05D001753 ORTHO05D001718 5.0e-07 57.8 48 58.3
FAN26G3025 Fragaria x ananassa HOM05D001753 ORTHO05D001718 5.0e-07 57.8 48 58.3
FAN28G2402 Fragaria x ananassa HOM05D001753 ORTHO05D001718 5.0e-07 57.8 48 58.3
Lj4A237T67 Lonicera japonica HOM05D001753 ORTHO05D001718 5.0e-07 57.8 50 58.0
Manes.11G110100 Manihot esculenta HOM05D001753 ORTHO05D001718 5.0e-07 57.8 51 54.9
Sed0013717 Sechium edule HOM05D001753 ORTHO05D001718 5.0e-07 57.8 43 58.1
THA.LOC104819159 Tarenaya hassleriana HOM05D001753 ORTHO05D001718 5.0e-07 57.8 50 54.0
THA.LOC104824735 Tarenaya hassleriana HOM05D001753 ORTHO05D001718 5.0e-07 57.8 51 58.8
MELO3C013250.2 Cucumis melo HOM05D001753 ORTHO05D001718 6.6e-07 57.4 50 54.0
Gohir.A02G178500 Gossypium hirsutum HOM05D001753 ORTHO05D001718 6.6e-07 57.4 50 56.0
Gorai.003G001600 Gossypium raimondii HOM05D001753 ORTHO05D001718 6.6e-07 57.4 50 56.0
Manes.01G156000 Manihot esculenta HOM05D001753 ORTHO05D001718 6.6e-07 57.4 44 63.6
Psat2g149600 Pisum sativum HOM05D001753 ORTHO05D001718 6.6e-07 57.4 50 58.0
RcHm_v2.0_Chr2g0097061 Rosa chinensis HOM05D001753 ORTHO05D001718 6.6e-07 57.4 48 56.2
Aa31LG1G14500 Aethionema arabicum HOM05D001753 ORTHO05D001718 8.6e-07 57.0 50 54.0
CSS0015729 Camellia sinensis var. sinensis HOM05D001753 ORTHO05D001718 8.6e-07 57.0 53 50.9
Cfa005367 Carpinus fangiana HOM05D001753 ORTHO05D001718 8.6e-07 57.0 50 54.0
Carub.0007s0019 Capsella rubella HOM05D001753 ORTHO05D001718 1.1e-06 56.6 49 59.2
CARHR281770 Cardamine hirsuta HOM05D001753 ORTHO05D001718 1.1e-06 56.6 50 54.0
COL.COLO4_22558 Corchorus olitorius HOM05D001753 ORTHO05D001718 1.1e-06 56.6 50 54.0
Psat4g105520 Pisum sativum HOM05D001753 ORTHO05D001718 1.1e-06 56.6 50 54.0
QL06p053055 Quercus lobata HOM05D001753 ORTHO05D001718 1.1e-06 56.6 50 56.0
Sp7g37470 Schrenkiella parvula HOM05D001753 ORTHO05D001718 1.1e-06 56.6 44 63.6
Sed0009088 Sechium edule HOM05D001753 ORTHO05D001718 1.1e-06 56.6 50 52.0
arahy.Tifrunner.gnm1.ann1.I4ZJJV Arachis hypogaea HOM05D001753 ORTHO05D001718 1.5e-06 56.2 50 54.0
arahy.Tifrunner.gnm1.ann1.JXP29T Arachis hypogaea HOM05D001753 ORTHO05D001718 1.5e-06 56.2 50 54.0
Ciclev10028502m.g Citrus clementina HOM05D001753 ORTHO05D001718 1.5e-06 56.2 51 51.0
DCAR_015657 Daucus carota HOM05D001753 ORTHO05D001718 1.5e-06 56.2 47 57.4
HanXRQChr14g0442901 Helianthus annuus HOM05D001753 ORTHO05D001718 1.5e-06 56.2 50 56.0
Peaxi162Scf00122g00251 Petunia axillaris HOM05D001753 ORTHO05D001718 1.5e-06 56.2 51 56.9
Aa31LG6G16710 Aethionema arabicum HOM05D001753 ORTHO05D001718 1.9e-06 55.8 44 59.1
AL7G10170 Arabidopsis lyrata HOM05D001753 ORTHO05D001718 1.9e-06 55.8 49 57.1
Carub.0008s2853 Capsella rubella HOM05D001753 ORTHO05D001718 1.9e-06 55.8 50 52.0
Thhalv10009790m.g Eutrema salsugineum HOM05D001753 ORTHO05D001718 1.9e-06 55.8 50 54.0
Gohir.A03G171000 Gossypium hirsutum HOM05D001753 ORTHO05D001718 1.9e-06 55.8 45 60.0
Gohir.D02G194200 Gossypium hirsutum HOM05D001753 ORTHO05D001718 1.9e-06 55.8 45 60.0
Gorai.005G217100 Gossypium raimondii HOM05D001753 ORTHO05D001718 1.9e-06 55.8 45 60.0
MD02G1114400 Malus domestica HOM05D001753 ORTHO05D001718 1.9e-06 55.8 52 57.7
Sp2g30700 Schrenkiella parvula HOM05D001753 ORTHO05D001718 1.9e-06 55.8 50 54.0
SGA_v2.0_scaffold20G08952 Striga asiatica HOM05D005757 ORTHO05D007090 1.9e-06 55.8 52 51.9
SGA_v2.0_scaffold480G52304 Striga asiatica HOM05D011902 ORTHO05D001718 1.9e-06 55.8 52 53.8
SGA_v2.0_scaffold80G25817 Striga asiatica HOM05D001753 ORTHO05D001718 1.9e-06 55.8 52 53.8
AL8G45640 Arabidopsis lyrata HOM05D001753 ORTHO05D001718 2.5e-06 55.5 50 52.0
AT5G65990 Arabidopsis thaliana HOM05D001753 ORTHO05D001718 2.5e-06 55.5 50 52.0
A02p41510 Brassica napus HOM05D001753 ORTHO05D001718 2.5e-06 55.5 50 54.0
BraA02t09092Z Brassica rapa HOM05D001753 ORTHO05D001718 2.5e-06 55.5 50 54.0
Duzib132G0143 Durio zibethinus HOM05D001753 ORTHO05D001718 2.5e-06 55.5 45 62.2
Thhalv10025229m.g Eutrema salsugineum HOM05D001753 ORTHO05D001718 2.5e-06 55.5 51 52.9
PSO210G1093 Papaver somniferum HOM05D001753 ORTHO05D001718 2.5e-06 55.5 51 56.9
PSO210G1939 Papaver somniferum HOM05D001753 ORTHO05D001718 2.5e-06 55.5 51 56.9
Sabra09G0130400 Salix brachista HOM05D001753 ORTHO05D001718 2.5e-06 55.5 46 58.7
Sed0019118 Sechium edule HOM05D001753 ORTHO05D001718 2.5e-06 55.5 50 54.0
SEGI_37410 Sequoiadendron giganteum HOM05D001753 ORTHO05D001718 2.5e-06 55.5 50 58.0
GSVIVG01023871001 Vitis vinifera HOM05D001753 ORTHO05D001718 2.5e-06 55.5 50 54.0
CSS0002567 Camellia sinensis var. sinensis HOM05D001753 ORTHO05D001718 3.3e-06 55.1 45 57.8
CSS0027657 Camellia sinensis var. sinensis HOM05D001753 ORTHO05D001718 3.3e-06 55.1 46 56.5
CSS0045325 Camellia sinensis var. sinensis HOM05D001753 ORTHO05D001718 3.3e-06 55.1 46 56.5
Medtr5g024300 Medicago truncatula HOM05D001753 ORTHO05D001718 4.3e-06 54.7 50 52.0
Phvul.002G117200 Phaseolus vulgaris HOM05D001753 ORTHO05D001718 4.3e-06 54.7 50 50.0
Rhsim11G0197900 Rhododendron simsii HOM05D001753 ORTHO05D001718 4.3e-06 54.7 50 52.0
SGA_v2.0_scaffold40G15491 Striga asiatica HOM05D001753 ORTHO05D001718 4.3e-06 54.7 52 51.9
TPR.G33877 Trifolium pratense HOM05D001753 ORTHO05D001718 4.3e-06 54.7 50 54.0
Hma1.2p1_0085F.1_g044590 Hydrangea macrophylla HOM05D001753 ORTHO05D001718 5.6e-06 54.3 50 52.0
Lalb_Chr16g0391671 Lupinus albus HOM05D001753 ORTHO05D001718 5.6e-06 54.3 51 52.9
CiPaw.07G002000 Carya illinoinensis HOM05D001753 ORTHO05D001718 7.3e-06 53.9 52 55.8
Potri.009G167900 Populus trichocarpa HOM05D001753 ORTHO05D001718 7.3e-06 53.9 51 54.9
C02p61440 Brassica napus HOM05D001753 ORTHO05D001718 9.5e-06 53.5 50 52.0
BolC2t12196H Brassica oleracea HOM05D001753 ORTHO05D001718 9.5e-06 53.5 50 52.0
BraA06t27777Z Brassica rapa HOM05D001753 ORTHO05D001718 9.5e-06 53.5 51 52.9
CAN.G337.151 Capsicum annuum HOM05D001753 ORTHO05D001718 9.5e-06 53.5 51 54.9
Migut.N01359 Erythranthe guttata HOM05D001753 ORTHO05D001718 9.5e-06 53.5 52 51.9
Lalb_Chr05g0214851 Lupinus albus HOM05D001753 ORTHO05D001718 9.5e-06 53.5 51 52.9
HPP92_014563 Vanilla planifolia HOM05D001753 ORTHO05D001718 9.5e-06 53.5 45 57.8


User provided reference genes

Program Settings