Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G986.7 Capsicum annuum HOM05D015341 ORTHO05D011718 1.1e-99 366.7 188 100.0
PGSC0003DMG400000106 Solanum tuberosum HOM05D015341 ORTHO05D011718 5.6e-40 168.3 194 47.4
PGSC0003DMG400000107 Solanum tuberosum HOM05D015341 ORTHO05D011718 4.9e-36 155.2 192 44.8
Nitab4.5_0004999g0050 Nicotiana tabacum HOM05D015341 ORTHO05D011718 3.2e-35 152.5 204 45.6
Nitab4.5_0000838g0200 Nicotiana tabacum HOM05D015341 ORTHO05D011718 5.4e-35 151.8 193 48.7
Solyc01g095880.1 Solanum lycopersicum HOM05D015341 ORTHO05D011718 6.2e-31 138.3 190 42.1
Peaxi162Scf00714g00519 Petunia axillaris HOM05D015341 ORTHO05D011718 2.6e-29 132.9 140 47.9
Sopen01g039620 Solanum pennellii HOM05D015341 ORTHO05D011718 4.4e-29 132.1 144 46.5
Peaxi162Scf00074g00078 Petunia axillaris HOM05D015341 ORTHO05D011718 1.1e-27 127.5 137 47.4
Gohir.D02G053350 Gossypium hirsutum HOM05D000896 ORTHO05D000594 4.2e-11 72.4 131 35.1
Dinv32585 Davidia involucrata HOM05D013692 ORTHO05D011718 3.5e-10 69.3 125 32.8
Gohir.A02G048201 Gossypium hirsutum HOM05D000896 ORTHO05D000594 7.9e-10 68.2 131 34.4
Prupe.1G539700 Prunus persica HOM05D031150 ORTHO05D000594 2.3e-09 66.6 138 27.5
Gohir.A07G201750 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.7e-09 65.1 131 33.6
Carub.0004s1432 Capsella rubella HOM05D000896 ORTHO05D000594 8.7e-09 64.7 104 29.8
AL4G28060 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.5e-08 63.9 144 28.5
Gohir.A01G161180 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.5e-08 63.9 131 31.3
Gohir.D01G148400 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.5e-08 63.9 131 31.3
Gohir.D02G050732 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.5e-08 63.9 131 32.8
Gorai.005G056000 Gossypium raimondii HOM05D000896 ORTHO05D000594 1.5e-08 63.9 131 32.8
Gohir.A02G044702 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.9e-08 63.5 131 32.8
BraA04t18691Z Brassica rapa HOM05D000896 ORTHO05D000594 2.5e-08 63.2 144 28.5
Carub.0004s1399 Capsella rubella HOM05D000896 ORTHO05D000594 2.5e-08 63.2 142 25.4
Gohir.D02G050666 Gossypium hirsutum HOM05D000896 ORTHO05D000594 3.3e-08 62.8 131 32.8
C04p69900 Brassica napus HOM05D000896 ORTHO05D000594 5.6e-08 62.0 131 28.2
PGR102G0562 Punica granatum HOM05D000896 ORTHO05D000594 7.4e-08 61.6 155 26.5
Duzib251G0257 Durio zibethinus HOM05D000896 ORTHO05D000594 1.3e-07 60.8 131 30.5
Nn1g05626 Nelumbo nucifera HOM05D000896 ORTHO05D000594 1.3e-07 60.8 140 28.6
Phvul.008G266500 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 1.3e-07 60.8 135 26.7
FvH4_7g13550 Fragaria vesca HOM05D000896 ORTHO05D000594 3.7e-07 59.3 139 23.0
FAN01G0395 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.7e-07 59.3 139 23.0
FAN06G0427 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.7e-07 59.3 139 23.0
SGA_v2.0_scaffold342G49412 Striga asiatica HOM05D018190 ORTHO05D011718 3.7e-07 59.3 125 25.6
BcaC02g07220 Brassica carinata HOM05D000896 ORTHO05D000594 4.8e-07 58.9 131 27.5
BolC4t28489H Brassica oleracea HOM05D000896 ORTHO05D000594 4.8e-07 58.9 131 27.5
Duzib251G0772 Durio zibethinus HOM05D000896 ORTHO05D000594 6.2e-07 58.5 131 29.8
Gohir.A01G163850 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.2e-07 58.5 140 30.0
Aqoxy5G01564 Aquilegia oxysepala HOM05D032674 ORTHO05D031249 8.1e-07 58.2 133 24.1
Aa31LG1G8430 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.1e-06 57.8 157 28.0
Gohir.D13G231533 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.1e-06 57.8 131 29.0
Sp4g13910 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.1e-06 57.8 114 28.9
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-06 57.4 111 33.3
Duzib251G0081 Durio zibethinus HOM05D000896 ORTHO05D000594 1.4e-06 57.4 132 28.0
MBI11_g35027_MAGBIO Magnolia biondii HOM05D018115 ORTHO05D017274 1.4e-06 57.4 126 26.2
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.8e-06 57.0 92 33.7
CsaV3_2G028710 Cucumis sativus L. HOM05D000896 ORTHO05D000594 2.4e-06 56.6 130 27.7
Gohir.A13G226166 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.4e-06 56.6 131 27.5
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 3.1e-06 56.2 144 26.4
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 3.1e-06 56.2 104 31.7
FAN06G5122 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.1e-06 56.2 124 24.2
Oeu000095.1 Olea europaea HOM05D013692 ORTHO05D011718 4.0e-06 55.8 58 34.5
A04p24270 Brassica napus HOM05D000896 ORTHO05D000594 5.3e-06 55.5 147 25.9
SGA_v2.0_scaffold18G08395 Striga asiatica HOM05D018190 ORTHO05D011718 5.3e-06 55.5 107 25.2
AL4G27540 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 6.9e-06 55.1 95 30.5
Carub.0004s1350 Capsella rubella HOM05D000896 ORTHO05D000594 6.9e-06 55.1 143 26.6
MELO3C010943.2 Cucumis melo HOM05D000896 ORTHO05D000594 6.9e-06 55.1 113 28.3
AL1G46070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 9.0e-06 54.7 137 28.5
BraA04t17946Z Brassica rapa HOM05D000896 ORTHO05D000594 9.0e-06 54.7 147 25.9
FAN03G2502 Fragaria x ananassa HOM05D000896 ORTHO05D000594 9.0e-06 54.7 139 21.6
Gohir.D13G231566 Gossypium hirsutum HOM05D000896 ORTHO05D000594 9.0e-06 54.7 130 27.7


User provided reference genes

Program Settings