Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G986.34 Capsicum annuum HOM05D004783 ORTHO05D005581 4.3e-130 468.0 235 100.0
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 6.4e-110 401.0 264 81.4
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 3.3e-90 335.5 231 78.4
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 8.1e-89 330.9 231 77.9
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 1.1e-88 330.5 231 77.9
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 5.5e-85 318.2 228 75.0
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 1.7e-70 270.0 210 71.4
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 3.8e-54 215.7 255 43.5
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 3.8e-54 215.7 263 45.2
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 6.5e-54 214.9 260 45.4
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 6.5e-54 214.9 257 44.7
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 8.5e-54 214.5 257 45.5
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 3.2e-53 212.6 258 43.8
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 3.2e-53 212.6 257 42.0
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 4.2e-53 212.2 230 47.4
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 4.2e-53 212.2 263 45.2
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 7.4e-50 201.4 263 41.4
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 3.7e-49 199.1 262 42.7
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 1.1e-48 197.6 262 42.0
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 1.4e-48 197.2 257 43.2
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 2.0e-47 193.4 215 48.8
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 7.7e-47 191.4 257 42.8
THA.LOC104800219 Tarenaya hassleriana HOM05D004783 ORTHO05D005581 6.5e-46 188.3 264 40.5
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 3.2e-45 186.0 261 44.4
Gorai.012G085500 Gossypium raimondii HOM05D004783 ORTHO05D005581 6.3e-41 171.8 259 39.4
Gohir.A05G337100 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.4e-40 170.6 260 39.2
Gohir.D04G075700 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.4e-40 170.6 257 38.9
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 5.0e-38 162.2 193 47.7
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 2.1e-36 156.8 186 46.2
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 8.0e-36 154.8 219 39.7
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 3.0e-35 152.9 199 42.7
ECA234G4279 Erigeron canadensis HOM05D004783 ORTHO05D005581 4.0e-35 152.5 185 44.9
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 5.7e-34 148.7 156 51.3
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 7.5e-34 148.3 196 41.3
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 2.2e-33 146.7 188 42.0
RcHm_v2.0_Chr5g0055041 Rosa chinensis HOM05D004783 ORTHO05D005581 1.4e-32 144.1 187 43.9
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 3.1e-32 142.9 260 33.5
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 7.0e-32 141.7 187 44.4
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 9.1e-32 141.4 184 43.5
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 1.6e-31 140.6 205 37.6
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 2.0e-31 140.2 199 40.7
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 2.7e-31 139.8 206 37.4
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 5.9e-31 138.7 205 37.1
Gorai.003G087500 Gossypium raimondii HOM05D004783 ORTHO05D005581 7.7e-31 138.3 188 44.7
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 2.9e-30 136.3 205 36.6
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 3.8e-30 136.0 201 37.3
BolC6t39583H Brassica oleracea HOM05D004783 ORTHO05D005581 3.8e-30 136.0 201 37.3
Gohir.D03G072203 Gossypium hirsutum HOM05D004783 ORTHO05D005581 8.5e-30 134.8 187 43.9
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 8.5e-30 134.8 189 41.8
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 8.5e-30 134.8 177 44.6
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 1.5e-29 134.0 199 37.2
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 1.2e-28 131.0 181 42.5
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 2.1e-28 130.2 200 38.5
Sabra01G0174200 Salix brachista HOM05D004783 ORTHO05D005581 8.0e-28 128.3 196 37.2
Potri.004G229100 Populus trichocarpa HOM05D004783 ORTHO05D005581 3.0e-27 126.3 195 37.9
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 5.2e-27 125.6 176 42.6
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 6.8e-27 125.2 194 36.6
Ciclev10024609m.g Citrus clementina HOM05D004783 ORTHO05D005581 8.8e-27 124.8 179 40.8
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 5.7e-26 122.1 199 35.2
COL.COLO4_29903 Corchorus olitorius HOM05D004783 ORTHO05D005581 5.7e-26 122.1 176 41.5
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 9.8e-26 121.3 159 42.8
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 1.3e-25 120.9 181 38.7
Lj4g0006774 Lotus japonicus HOM05D004783 ORTHO05D005581 2.8e-25 119.8 188 38.3
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 3.7e-25 119.4 186 38.2
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 3.7e-25 119.4 188 37.2
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 6.3e-25 118.6 159 45.3
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 6.3e-25 118.6 184 40.8
Manes.01G175200 Manihot esculenta HOM05D004783 ORTHO05D005581 1.4e-24 117.5 174 40.2
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 2.4e-24 116.7 157 44.6
Carub.0002s1809 Capsella rubella HOM05D004783 ORTHO05D005581 5.4e-24 115.5 187 35.8
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 7.0e-24 115.2 185 34.6
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 1.6e-23 114.0 160 41.2
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 1.6e-23 114.0 190 38.4
CDE12G0310 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 2.7e-23 113.2 248 29.8
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 7.7e-23 111.7 161 41.0
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 7.7e-23 111.7 161 41.0
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 2.3e-22 110.2 173 38.7
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 5.0e-22 109.0 158 39.9
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 6.6e-22 108.6 161 40.4
Migut.J00915 Erythranthe guttata HOM05D004783 ORTHO05D005581 8.6e-22 108.2 149 40.9
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 2.5e-21 106.7 153 42.5
Sc10g0000400 Simmondsia chinensis HOM05D004783 ORTHO05D005581 5.6e-21 105.5 147 42.9
COL.COLO4_04586 Corchorus olitorius HOM05D004783 ORTHO05D005581 1.2e-20 104.4 186 38.2
Migut.L01576 Erythranthe guttata HOM05D004783 ORTHO05D005581 1.6e-20 104.0 127 42.5
Prupe.8G057300 Prunus persica HOM05D004783 ORTHO05D005581 3.6e-20 102.8 158 40.5
HPP92_028041 Vanilla planifolia HOM05D004783 ORTHO05D005581 6.1e-20 102.1 246 31.7
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 1.4e-19 100.9 155 40.6
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 1.8e-19 100.5 162 37.0
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 3.0e-19 99.8 130 40.8
SHI25070 Sapria himalayana HOM05D004783 ORTHO05D005581 3.0e-19 99.8 181 35.4
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 6.8e-19 98.6 130 44.6
BolC6t39586H Brassica oleracea HOM05D004783 ORTHO05D005581 8.9e-19 98.2 163 35.0
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 1.2e-18 97.8 161 34.2
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 5.7e-18 95.5 161 36.6
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 7.5e-18 95.1 129 38.8
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 9.8e-18 94.7 159 37.1
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 4.9e-17 92.4 150 39.3
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 3.2e-16 89.7 154 35.7
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 1.3e-14 84.3 155 34.8
FAN16G2696 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.3e-14 84.3 155 32.9
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 8.6e-14 81.6 160 34.4
MBI04_g31976_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 8.6e-14 81.6 160 34.4
Rhsim01G0260800 Rhododendron simsii HOM05D004783 ORTHO05D005581 1.1e-13 81.3 154 35.7
FvH4_3g29690 Fragaria vesca HOM05D004783 ORTHO05D005581 1.5e-13 80.9 159 31.4
FAN10G2924 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.5e-13 80.1 59 62.7
Sed0014805 Sechium edule HOM05D004783 ORTHO05D005581 3.3e-13 79.7 152 32.2
Os02g0127600 Oryza sativa ssp. japonica HOM05D004783 ORTHO05D005581 2.1e-12 77.0 163 33.7
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 4.7e-12 75.9 156 30.1
Zm00001eb231010 Zea mays HOM05D004783 ORTHO05D005581 5.2e-11 72.4 164 31.7
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 2.0e-10 70.5 201 23.4
FAN09G0480 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.6e-10 70.1 79 43.0
FAN09G4036 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.6e-10 70.1 79 43.0
FAN18G1946 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.6e-10 70.1 79 43.0
FAN26G1702 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.6e-10 70.1 79 43.0
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 2.6e-10 70.1 88 43.2
CDE01G0049 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 4.4e-10 69.3 133 32.3
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 4.4e-10 69.3 201 22.9
HanXRQChr14g0440391 Helianthus annuus HOM05D000891 ORTHO05D000761 7.5e-10 68.6 212 23.1
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 7.5e-10 68.6 200 22.0
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 9.8e-10 68.2 200 22.0
ECA238G4369 Erigeron canadensis HOM05D000891 ORTHO05D000761 1.7e-09 67.4 208 20.7
Ciclev10025762m.g Citrus clementina HOM05D000891 ORTHO05D000761 2.9e-09 66.6 200 22.5
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 2.9e-09 66.6 47 61.7
Lsat_1_v5_gn_2_76721 Lactuca sativa HOM05D000891 ORTHO05D000761 2.9e-09 66.6 207 21.3
Potri.005G125400 Populus trichocarpa HOM05D000891 ORTHO05D000761 3.7e-09 66.2 207 19.8
Sabra05G0103000 Salix brachista HOM05D000891 ORTHO05D000761 3.7e-09 66.2 207 19.8
TAR622G0302 Trochodendron aralioides HOM05D004783 ORTHO05D005581 3.7e-09 66.2 161 34.2
TAR622G0815 Trochodendron aralioides HOM05D004783 ORTHO05D005581 3.7e-09 66.2 161 34.2
Ca_06171_v3 Cicer arietinum L. HOM05D004783 ORTHO05D005581 6.4e-09 65.5 163 34.4
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 1.1e-08 64.7 201 21.9
Cc06_g12410 Coffea canephora HOM05D004783 ORTHO05D005581 1.4e-08 64.3 123 32.5
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.4e-08 64.3 196 25.0
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 2.4e-08 63.5 169 20.7
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 2.4e-08 63.5 157 24.8
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 4.1e-08 62.8 46 63.0
A09p11950 Brassica napus HOM05D000891 ORTHO05D000761 5.4e-08 62.4 195 22.6
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 9.2e-08 61.6 197 22.3
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 9.2e-08 61.6 197 22.3
Potri.003G000601 Populus trichocarpa HOM05D004783 ORTHO05D005581 1.6e-07 60.8 153 27.5
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 1.6e-07 60.8 235 23.8
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 1.6e-07 60.8 215 21.4
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 1.6e-07 60.8 205 20.5
SGA_v2.0_scaffold33G13374 Striga asiatica HOM05D000891 ORTHO05D000761 1.6e-07 60.8 213 23.5
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 2.0e-07 60.5 207 21.3
arahy.Tifrunner.gnm1.ann1.7R7ZTH Arachis hypogaea HOM05D004783 ORTHO05D005581 2.7e-07 60.1 49 59.2
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 4.6e-07 59.3 213 21.6
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 6.0e-07 58.9 166 25.3
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 6.0e-07 58.9 177 22.6
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 6.0e-07 58.9 151 26.5
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 7.8e-07 58.5 186 24.7
Ca_01065_v3 Cicer arietinum L. HOM05D000891 ORTHO05D000761 7.8e-07 58.5 204 24.5
arahy.Tifrunner.gnm1.ann1.IFYB19 Arachis hypogaea HOM05D004783 ORTHO05D005581 1.0e-06 58.2 42 61.9
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 1.0e-06 58.2 196 24.0
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 1.0e-06 58.2 210 23.3
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.0e-06 58.2 207 24.2
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.0e-06 58.2 207 24.2
arahy.Tifrunner.gnm1.ann1.U93Q4L Arachis hypogaea HOM05D004783 ORTHO05D005581 1.3e-06 57.8 43 60.5
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 1.3e-06 57.8 218 22.9
Medtr5g048070 Medicago truncatula HOM05D004271 ORTHO05D006011 1.3e-06 57.8 222 25.7
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 1.7e-06 57.4 200 20.5
Dinv29903 Davidia involucrata HOM05D013428 ORTHO05D015803 2.3e-06 57.0 105 34.3
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 2.3e-06 57.0 209 23.4
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 2.3e-06 57.0 166 25.3
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 2.3e-06 57.0 166 25.3
SGA_v2.0_scaffold9G04849 Striga asiatica HOM05D004783 ORTHO05D005581 3.0e-06 56.6 40 57.5
Ca_20110_v3 Cicer arietinum L. HOM05D006819 ORTHO05D008763 3.9e-06 56.2 111 27.0
unitig_21.g20398 Utricularia gibba HOM05D007291 ORTHO05D009038 3.9e-06 56.2 213 20.7
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 5.0e-06 55.8 154 24.7
Lsat_1_v5_gn_3_115200 Lactuca sativa HOM05D000162 ORTHO05D000090 5.0e-06 55.8 183 24.6
arahy.Tifrunner.gnm1.ann1.I0AKGU Arachis hypogaea HOM05D004783 ORTHO05D005581 6.6e-06 55.5 100 37.0
arahy.Tifrunner.gnm1.ann1.Z9P42K Arachis hypogaea HOM05D004783 ORTHO05D005581 6.6e-06 55.5 42 61.9
QL09p032747 Quercus lobata HOM05D000424 ORTHO05D000355 6.6e-06 55.5 150 26.7
Zm00001eb210080 Zea mays HOM05D011046 ORTHO05D013342 6.6e-06 55.5 116 28.4
Zm00001eb367370 Zea mays HOM05D011046 ORTHO05D013342 6.6e-06 55.5 116 28.4
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 8.6e-06 55.1 153 24.8
arahy.Tifrunner.gnm1.ann1.EB1NGP Arachis hypogaea HOM05D004783 ORTHO05D005581 8.6e-06 55.1 55 49.1
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 8.6e-06 55.1 154 24.7
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 8.6e-06 55.1 233 21.0
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 8.6e-06 55.1 95 29.5


User provided reference genes

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