Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G986.33 Capsicum annuum HOM05D004783 ORTHO05D005581 5.1e-122 441.0 214 100.0
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 9.4e-84 313.9 312 57.1
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 1.4e-76 290.0 312 53.8
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 1.9e-76 289.7 312 53.5
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 9.4e-76 287.3 312 53.5
Nitab4.5_0003308g0060 Nicotiana tabacum HOM05D004783 ORTHO05D005581 6.7e-74 281.2 311 52.4
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 1.2e-70 270.4 312 50.3
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 1.7e-53 213.4 312 39.7
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 1.7e-48 196.8 312 37.8
Actinidia24491 Actinidia chinensis HOM05D004783 ORTHO05D005581 4.9e-48 195.3 311 37.9
Prupe.8G057300 Prunus persica HOM05D004783 ORTHO05D005581 1.1e-44 184.1 311 36.3
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 4.3e-44 182.2 313 36.1
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 5.6e-44 181.8 312 35.3
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 5.6e-44 181.8 312 35.3
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 7.3e-44 181.4 312 35.3
TAR622G0302 Trochodendron aralioides HOM05D004783 ORTHO05D005581 9.5e-44 181.0 314 35.7
TAR622G0815 Trochodendron aralioides HOM05D004783 ORTHO05D005581 9.5e-44 181.0 314 35.7
Cpa.g.c26548.5 Carica papaya HOM05D004783 ORTHO05D005581 3.6e-43 179.1 312 35.3
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 5.2e-42 175.3 312 34.6
Rhsim01G0260800 Rhododendron simsii HOM05D004783 ORTHO05D005581 5.2e-42 175.3 310 34.5
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 1.2e-41 174.1 312 34.6
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 3.4e-41 172.6 311 33.8
Cc06_g12410 Coffea canephora HOM05D004783 ORTHO05D005581 4.4e-41 172.2 314 34.4
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 9.8e-41 171.0 313 34.2
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 8.3e-40 167.9 312 33.7
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 2.4e-39 166.4 312 32.7
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 5.4e-39 165.2 312 33.3
MD10G1047800 Malus domestica HOM05D004783 ORTHO05D005581 1.0e-37 161.0 312 33.3
Migut.J00915 Erythranthe guttata HOM05D004783 ORTHO05D005581 1.3e-37 160.6 308 34.1
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 5.0e-37 158.7 312 32.4
Sed0014805 Sechium edule HOM05D004783 ORTHO05D005581 1.9e-36 156.8 303 33.3
CsaV3_2G007350 Cucumis sativus L. HOM05D004783 ORTHO05D005581 2.5e-36 156.4 312 34.0
Sc10g0000400 Simmondsia chinensis HOM05D004783 ORTHO05D005581 5.6e-36 155.2 314 33.8
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 7.3e-36 154.8 301 34.2
Ah.16g100720 Amaranthus hybridus HOM05D004783 ORTHO05D005581 4.7e-35 152.1 312 31.1
Gohir.A02G106600 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.0e-34 151.0 312 32.4
FvH4_3g29690 Fragaria vesca HOM05D004783 ORTHO05D005581 1.8e-34 150.2 200 44.0
FAN11G1373 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.8e-34 150.2 200 44.0
FAN15G2228 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.8e-34 150.2 200 44.0
RcHm_v2.0_Chr5g0055041 Rosa chinensis HOM05D004783 ORTHO05D005581 3.1e-34 149.4 315 32.4
FAN16G2696 Fragaria x ananassa HOM05D004783 ORTHO05D005581 5.2e-34 148.7 200 43.5
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 5.2e-34 148.7 312 31.1
FAN25G1477 Fragaria x ananassa HOM05D004783 ORTHO05D005581 6.8e-34 148.3 200 43.5
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 2.0e-33 146.7 312 32.1
Manes.01G175200 Manihot esculenta HOM05D004783 ORTHO05D005581 5.8e-33 145.2 201 41.3
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 1.3e-32 144.1 315 34.3
Ciclev10024609m.g Citrus clementina HOM05D004783 ORTHO05D005581 3.7e-32 142.5 315 31.4
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 4.9e-32 142.1 312 30.8
COL.COLO4_29903 Corchorus olitorius HOM05D004783 ORTHO05D005581 4.9e-32 142.1 313 30.4
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 6.4e-32 141.7 191 37.2
TWI79G0945 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 8.3e-32 141.4 312 29.8
QL03p008874 Quercus lobata HOM05D004783 ORTHO05D005581 1.9e-31 140.2 305 31.1
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 3.2e-31 139.4 312 30.8
Lsat_1_v5_gn_4_139241 Lactuca sativa HOM05D004783 ORTHO05D005581 4.1e-31 139.0 317 30.3
Potri.004G229100 Populus trichocarpa HOM05D004783 ORTHO05D005581 1.2e-30 137.5 315 30.5
Gorai.003G087500 Gossypium raimondii HOM05D004783 ORTHO05D005581 1.0e-29 134.4 191 39.8
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 1.0e-29 134.4 212 36.3
Gohir.D03G072203 Gossypium hirsutum HOM05D004783 ORTHO05D005581 1.7e-29 133.7 191 39.3
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 2.3e-29 133.3 309 30.7
Sabra01G0174200 Salix brachista HOM05D004783 ORTHO05D005581 8.6e-29 131.3 182 39.0
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 2.5e-28 129.8 319 29.8
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 4.7e-27 125.6 196 36.2
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 6.2e-27 125.2 201 37.8
Lj4g0006774 Lotus japonicus HOM05D004783 ORTHO05D005581 2.3e-26 123.2 314 28.3
Gohir.D04G075700 Gossypium hirsutum HOM05D004783 ORTHO05D005581 3.1e-26 122.9 200 37.5
Gorai.012G085500 Gossypium raimondii HOM05D004783 ORTHO05D005581 3.1e-26 122.9 200 37.5
Lalb_Chr04g0249471 Lupinus albus HOM05D004783 ORTHO05D005581 4.0e-26 122.5 313 30.0
Gohir.A05G337100 Gossypium hirsutum HOM05D004783 ORTHO05D005581 5.2e-26 122.1 200 37.0
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 2.6e-25 119.8 304 28.9
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 5.8e-25 118.6 201 32.8
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 5.8e-25 118.6 203 35.5
Migut.L01576 Erythranthe guttata HOM05D004783 ORTHO05D005581 2.2e-24 116.7 191 33.5
LjContig00564g0007311 Lotus japonicus HOM05D004783 ORTHO05D005581 4.9e-24 115.5 321 27.7
Carub.0002s1809 Capsella rubella HOM05D004783 ORTHO05D005581 1.1e-23 114.4 195 32.8
PSO063G6404 Papaver somniferum HOM05D004783 ORTHO05D005581 2.4e-23 113.2 216 33.8
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 3.2e-23 112.8 200 32.5
DCAR_019962 Daucus carota HOM05D004783 ORTHO05D005581 3.2e-23 112.8 204 34.8
Manes.02G133800 Manihot esculenta HOM05D004783 ORTHO05D005581 3.2e-23 112.8 123 44.7
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 4.1e-23 112.5 192 34.9
PSO198G0081 Papaver somniferum HOM05D004783 ORTHO05D005581 7.1e-23 111.7 197 34.0
ECA234G4279 Erigeron canadensis HOM05D004783 ORTHO05D005581 1.6e-22 110.5 192 31.8
Os02g0127600 Oryza sativa ssp. japonica HOM05D004783 ORTHO05D005581 2.1e-22 110.2 198 32.3
THA.LOC104800219 Tarenaya hassleriana HOM05D004783 ORTHO05D005581 2.1e-22 110.2 188 33.0
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 4.6e-22 109.0 195 33.8
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 7.8e-22 108.2 198 32.8
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 7.8e-22 108.2 191 34.6
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 1.3e-21 107.5 186 36.6
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 3.0e-21 106.3 312 29.8
Zm00001eb231010 Zea mays HOM05D004783 ORTHO05D005581 3.0e-21 106.3 191 33.5
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 3.9e-21 105.9 274 28.5
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 5.1e-21 105.5 302 26.8
Eucgr.J00651 Eucalyptus grandis HOM05D004783 ORTHO05D005581 5.1e-21 105.5 302 27.5
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 8.6e-21 104.8 210 29.0
Atru.BG.182.p Acer truncatum HOM05D004783 ORTHO05D005581 1.9e-20 103.6 301 27.6
SHI25070 Sapria himalayana HOM05D004783 ORTHO05D005581 1.9e-20 103.6 114 48.2
arahy.Tifrunner.gnm1.ann1.7R7ZTH Arachis hypogaea HOM05D004783 ORTHO05D005581 2.5e-20 103.2 309 27.2
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 5.6e-20 102.1 302 26.2
Ca_06171_v3 Cicer arietinum L. HOM05D004783 ORTHO05D005581 9.5e-20 101.3 181 34.3
arahy.Tifrunner.gnm1.ann1.IFYB19 Arachis hypogaea HOM05D004783 ORTHO05D005581 1.2e-19 100.9 312 26.3
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 1.6e-19 100.5 188 33.5
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 2.1e-19 100.1 186 34.9
arahy.Tifrunner.gnm1.ann1.6TK8TS Arachis hypogaea HOM05D004783 ORTHO05D005581 2.8e-19 99.8 312 26.6
Medtr5g088490 Medicago truncatula HOM05D004783 ORTHO05D005581 6.2e-19 98.6 190 31.1
arahy.Tifrunner.gnm1.ann1.I0AKGU Arachis hypogaea HOM05D004783 ORTHO05D005581 8.1e-19 98.2 179 31.8
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 8.1e-19 98.2 217 32.7
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 1.1e-18 97.8 177 31.1
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 3.1e-18 96.3 110 39.1
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 3.1e-18 96.3 110 39.1
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 3.1e-18 96.3 110 39.1
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 4.0e-18 95.9 177 30.5
arahy.Tifrunner.gnm1.ann1.Z9P42K Arachis hypogaea HOM05D004783 ORTHO05D005581 5.2e-18 95.5 179 31.3
HPP92_028305 Vanilla planifolia HOM05D004783 ORTHO05D005581 2.0e-17 93.6 184 33.7
arahy.Tifrunner.gnm1.ann1.6847YK Arachis hypogaea HOM05D004783 ORTHO05D005581 4.4e-17 92.4 178 33.1
arahy.Tifrunner.gnm1.ann1.EB1NGP Arachis hypogaea HOM05D004783 ORTHO05D005581 5.8e-17 92.0 181 31.5
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 1.6e-14 84.0 194 30.9
arahy.Tifrunner.gnm1.ann1.U93Q4L Arachis hypogaea HOM05D004783 ORTHO05D005581 4.6e-14 82.4 180 31.1
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 1.5e-12 77.4 185 31.9
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 7.3e-12 75.1 121 33.9
COL.COLO4_04586 Corchorus olitorius HOM05D004783 ORTHO05D005581 8.9e-10 68.2 190 27.4
FAN10G2924 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.4e-09 65.9 139 30.9
FAN16G1650 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.4e-09 65.9 139 30.9
FAN27G1421 Fragaria x ananassa HOM05D004783 ORTHO05D005581 4.4e-09 65.9 139 30.9
FAN05G2593 Fragaria x ananassa HOM05D004783 ORTHO05D005581 1.3e-08 64.3 139 30.2
ATR0605G071 Amborella trichopoda HOM05D004783 ORTHO05D005581 6.4e-08 62.0 144 33.3
Potri.003G000701 Populus trichocarpa HOM05D004783 ORTHO05D005581 9.3e-07 58.2 47 55.3
CDE12G0310 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 2.1e-06 57.0 192 26.6
BolC6t39583H Brassica oleracea HOM05D004783 ORTHO05D005581 7.8e-06 55.1 62 48.4


User provided reference genes

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