Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.7e-57 225.7 106 100.0
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.1e-56 219.9 106 96.2
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 9.1e-56 219.9 106 96.2
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.3e-54 216.1 104 96.2
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 6.5e-54 213.8 106 93.4
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 6.5e-54 213.8 106 93.4
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.5e-53 212.6 106 93.4
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.8e-49 197.6 104 86.5
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 4.5e-47 191.0 104 83.7
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 7.7e-47 190.3 104 82.7
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.3e-46 189.5 103 82.5
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.7e-46 189.1 104 82.7
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.8e-46 188.0 105 80.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.8e-46 188.0 104 81.7
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.0e-46 187.6 103 81.6
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 6.5e-46 187.2 102 83.3
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 8.5e-46 186.8 102 82.4
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.5e-45 185.3 105 77.1
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.2e-45 184.5 102 81.4
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 4.2e-45 184.5 104 79.8
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 5.5e-45 184.1 104 78.8
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 9.5e-45 183.3 105 76.2
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.2e-44 183.0 104 77.9
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.6e-44 182.6 105 77.1
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.6e-44 182.6 104 78.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.6e-44 182.6 104 77.9
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 2.1e-44 182.2 104 78.8
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 2.8e-44 181.8 104 79.8
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.8e-44 181.8 104 78.8
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.6e-44 181.4 104 77.9
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 6.1e-44 180.6 104 76.9
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 8.0e-44 180.3 104 77.9
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 8.0e-44 180.3 104 76.9
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.0e-43 179.9 105 74.3
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 76.9
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 76.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 1.8e-43 179.1 102 80.4
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.3e-43 178.7 102 80.4
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 75.0
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 76.9
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 75.0
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.9
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.9
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.2e-43 177.6 104 76.9
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 5.2e-43 177.6 105 74.3
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 6.8e-43 177.2 104 76.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 8.8e-43 176.8 104 76.0
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.0
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.0
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 75.0
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.5e-42 176.0 104 75.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 73.3
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.5e-42 176.0 104 77.9
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 74.0
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.0e-42 175.6 106 75.5
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.6e-42 175.3 104 76.0
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 76.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.4e-42 174.9 102 77.5
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 3.4e-42 174.9 104 76.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 4.4e-42 174.5 104 75.0
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.4e-42 174.5 104 74.0
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.7e-42 174.1 104 74.0
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 5.7e-42 174.1 104 75.0
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.7e-42 174.1 104 74.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 7.5e-42 173.7 102 75.5
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 7.5e-42 173.7 102 75.5
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 7.5e-42 173.7 104 74.0
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 9.8e-42 173.3 104 74.0
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 9.8e-42 173.3 104 74.0
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 9.8e-42 173.3 104 73.1
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 9.8e-42 173.3 104 74.0
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 9.8e-42 173.3 104 75.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 9.8e-42 173.3 102 74.5
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.3e-41 172.9 102 74.5
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 102 75.5
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.3e-41 172.9 102 76.5
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.3e-41 172.9 102 74.5
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.7e-41 172.6 102 74.5
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.7e-41 172.6 98 79.6
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.7e-41 172.6 105 71.4
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 76.0
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 73.1
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 2.2e-41 172.2 100 76.0
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 75.0
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 2.8e-41 171.8 104 72.1
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 3.7e-41 171.4 104 74.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 3.7e-41 171.4 103 74.8
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 3.7e-41 171.4 100 76.0
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 4.9e-41 171.0 103 73.8
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 4.9e-41 171.0 104 72.1
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 4.9e-41 171.0 104 72.1
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 4.9e-41 171.0 103 74.8
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 4.9e-41 171.0 105 74.3
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 6.3e-41 170.6 103 73.8
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 6.3e-41 170.6 103 73.8
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.3e-41 170.2 98 76.5
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 8.3e-41 170.2 103 73.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 8.3e-41 170.2 103 72.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.1e-40 169.9 94 78.7
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 1.8e-40 169.1 105 70.5
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.8e-40 169.1 104 71.2
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.4e-40 168.7 105 70.5
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 2.4e-40 168.7 103 73.8
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 2.4e-40 168.7 86 86.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 2.4e-40 168.7 101 74.3
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.4e-40 168.7 104 74.0
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 4.1e-40 167.9 102 73.5
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 4.1e-40 167.9 102 73.5
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 4.1e-40 167.9 104 72.1
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.4e-40 167.5 94 78.7
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 9.2e-40 166.8 101 72.3
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 9.2e-40 166.8 104 70.2
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.6e-39 166.0 101 72.3
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.6e-39 166.0 104 70.2
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 2.0e-39 165.6 104 69.2
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.0e-39 165.6 104 70.2
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.7e-39 165.2 104 70.2
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.7e-39 165.2 104 70.2
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.7e-39 165.2 104 71.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 3.5e-39 164.9 106 72.6
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 5.9e-39 164.1 105 70.5
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 5.9e-39 164.1 103 69.9
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 5.9e-39 164.1 102 69.6
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.0e-38 163.3 104 68.3
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.0e-38 163.3 105 69.5
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.0e-38 163.3 103 68.0
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 68.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.7e-38 162.5 104 68.3
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.3e-38 162.2 104 69.2
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.8e-38 161.4 104 67.3
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.6e-38 160.6 104 67.3
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.3e-37 158.3 165 50.9
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 7.3e-37 157.1 104 67.3
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 9.5e-37 156.8 104 65.4
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.1e-36 155.6 86 76.7
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 5.2e-35 151.0 94 69.1
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 6.4e-33 144.1 73 82.2
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 8.3e-33 143.7 82 79.3
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.1e-32 141.4 94 66.0
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.1e-32 141.4 98 66.3
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.6e-31 139.4 105 61.9
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.6e-31 139.4 98 63.3
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.0e-30 136.7 82 75.6
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 3.0e-30 135.2 93 66.7
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.0e-30 135.2 105 60.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 6.6e-30 134.0 70 78.6
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.6e-29 131.0 80 72.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.4e-26 121.3 73 74.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 9.8e-26 120.2 94 53.2
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 5.0e-22 107.8 71 70.4
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.1e-21 106.7 67 74.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.1e-21 106.7 63 79.4
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 2.1e-20 102.4 91 48.4
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 3.6e-20 101.7 69 69.6
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 6.2e-20 100.9 63 76.2
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 8.1e-20 100.5 60 78.3
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.8e-19 99.4 63 74.6
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 6.8e-19 97.4 60 75.0
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 3.4e-18 95.1 57 77.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 3.7e-17 91.7 90 43.3
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 3.7e-17 91.7 55 76.4
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 8.3e-17 90.5 106 49.1
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.1e-15 85.9 47 83.0
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 5.1e-14 81.3 46 71.7
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 5.1e-14 81.3 65 61.5
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 7.3e-13 77.4 52 57.7
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 2.1e-12 75.9 45 73.3


User provided reference genes

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