Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.6e-189 666.0 347 100.0
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 3.5e-157 558.5 371 82.2
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 6.7e-156 554.3 348 85.9
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 7.9e-149 530.8 341 83.3
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 1.3e-146 523.5 355 81.4
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 2.8e-146 522.3 318 87.1
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 3.8e-135 485.3 377 71.9
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 4.8e-114 415.2 355 65.9
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 5.3e-113 411.8 353 66.6
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 2.7e-112 409.5 323 69.0
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 5.0e-111 405.2 354 64.1
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 3.6e-109 399.1 391 59.3
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 8.8e-108 394.4 337 64.7
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.2e-107 394.0 352 63.1
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.0e-107 393.3 349 61.6
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 5.7e-107 391.7 357 60.5
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 4.8e-106 388.7 336 66.4
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 8.3e-106 387.9 351 62.1
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 1.1e-105 387.5 354 61.0
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 7.0e-105 384.8 369 59.1
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 9.1e-105 384.4 359 61.0
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.6e-104 383.6 390 59.2
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 2.0e-104 383.3 358 59.8
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 4.5e-104 382.1 363 60.1
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 7.7e-104 381.3 354 61.3
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 8.6e-103 377.9 353 61.2
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 7.2e-102 374.8 355 60.8
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 2.8e-101 372.9 366 59.0
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 8.0e-101 371.3 354 60.7
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.2e-99 367.5 355 59.4
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 2.6e-99 366.3 326 62.9
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 1.3e-98 364.0 333 60.7
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.1e-97 360.9 451 50.3
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 9.2e-97 357.8 422 51.9
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.2e-96 357.5 353 59.8
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 4.5e-96 355.5 440 49.3
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.0e-95 354.4 441 47.8
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 1.7e-95 353.6 400 53.2
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 8.6e-95 351.3 360 57.5
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.5e-94 349.7 469 49.5
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.4e-92 344.0 453 49.0
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 6.8e-92 341.7 434 49.8
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 1.5e-91 340.5 345 57.7
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 4.4e-91 339.0 349 56.7
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 2.2e-90 336.7 483 44.9
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 4.9e-90 335.5 470 45.5
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 4.1e-89 332.4 460 47.0
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 1.6e-88 330.5 356 56.2
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 4.6e-88 328.9 436 47.2
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.3e-87 327.4 280 62.9
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 3.9e-87 325.9 485 45.6
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 6.6e-87 325.1 443 47.4
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 6.6e-87 325.1 330 56.7
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 4.3e-86 322.4 500 43.2
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 4.3e-86 322.4 436 47.0
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 9.5e-86 321.2 437 46.2
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.2e-85 320.9 482 43.8
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.7e-85 318.9 483 42.9
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 6.2e-85 318.5 492 43.1
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.8e-84 317.0 501 41.7
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.1e-84 316.2 492 42.5
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 5.2e-84 315.5 492 42.9
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 6.8e-84 315.1 310 58.4
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 1.2e-83 314.3 286 63.3
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 2.6e-83 313.2 459 44.7
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.4e-83 312.8 450 45.1
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 4.4e-83 312.4 459 44.7
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 4.4e-83 312.4 501 42.5
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 7.5e-83 311.6 519 41.6
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.3e-82 310.8 412 48.1
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.7e-82 310.5 421 48.5
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 2.9e-82 309.7 281 59.1
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 3.7e-82 309.3 495 42.2
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 3.7e-82 309.3 378 50.3
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 3.7e-82 309.3 378 50.3
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.4e-81 306.6 525 41.0
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 4.1e-81 305.8 408 48.0
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 4.1e-81 305.8 351 51.0
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.2e-80 304.3 512 41.0
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 2.1e-80 303.5 416 47.1
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.5e-80 302.8 401 48.1
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.0e-79 301.2 409 47.2
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 1.0e-79 301.2 458 44.5
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.3e-79 300.1 502 40.6
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 8.6e-79 298.1 468 43.6
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 1.5e-78 297.4 417 48.4
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.3e-78 296.2 333 55.3
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 9.5e-78 294.7 402 46.5
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 2.1e-77 293.5 350 51.7
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 2.3e-76 290.0 434 44.2
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 2.6e-75 286.6 313 51.8
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 4.4e-75 285.8 441 43.8
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 5.8e-75 285.4 425 43.3
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.7e-74 283.9 428 44.2
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.2e-74 283.5 476 42.2
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.2e-72 277.7 440 44.5
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 1.0e-71 274.6 454 42.1
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 1.0e-71 274.6 409 45.0
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.3e-71 273.5 482 39.2
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 8.6e-71 271.6 452 42.7
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 2.8e-69 266.5 403 45.2
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 6.2e-69 265.4 448 42.2
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 6.8e-68 261.9 447 42.3
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.7e-66 257.3 497 40.4
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 3.8e-66 256.1 310 50.3
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 8.4e-66 255.0 474 36.5
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 4.2e-65 252.7 451 40.8
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 2.7e-64 250.0 444 40.3
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 3.5e-64 249.6 371 43.7
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 6.0e-64 248.8 379 44.9
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 1.3e-63 247.7 578 35.1
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 5.6e-62 242.3 479 38.4
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.1e-60 238.0 583 34.3
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.1e-60 238.0 504 35.7
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.1e-60 238.0 504 35.7
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 8.4e-58 228.4 176 69.9
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 2.1e-56 223.8 314 46.5
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.1e-54 218.0 360 43.9
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 7.3e-54 215.3 138 78.3
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 3.5e-48 196.4 316 46.2
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.3e-47 194.5 149 68.5
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.3e-46 189.9 145 69.7
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 8.1e-45 185.3 364 39.6
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 5.7e-38 162.5 221 48.9
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 7.4e-38 162.2 441 33.1
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 2.7e-32 143.7 108 67.6
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 9.7e-30 135.2 167 49.7
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 1.3e-29 134.8 356 30.3
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 6.3e-21 105.9 73 71.2
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 5.9e-19 99.4 73 67.1
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 5.9e-19 99.4 342 30.4
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 2.3e-15 87.4 76 60.5
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 8.2e-13 79.0 73 49.3
MCO13G284 Micromonas commoda HOM05D005805 ORTHO05D007226 3.3e-06 57.0 328 22.9


User provided reference genes

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