Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 8.9e-260 899.8 475 100.0
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 7.3e-246 853.6 450 94.2
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 1.2e-245 852.8 449 94.2
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 9.9e-211 736.9 518 76.1
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 6.7e-191 671.0 445 77.5
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 1.9e-190 669.5 451 77.2
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 7.4e-190 667.5 445 77.3
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 1.0e-186 657.1 460 72.6
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 5.0e-186 654.8 450 75.1
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 6.5e-186 654.4 449 74.6
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 6.5e-186 654.4 451 74.7
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.1e-185 653.7 433 76.2
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 5.5e-185 651.4 454 72.7
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 2.1e-184 649.4 455 71.6
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 7.9e-184 647.5 445 73.9
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 7.9e-184 647.5 455 72.7
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 3.9e-183 645.2 445 73.9
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 3.9e-183 645.2 455 72.7
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 5.1e-183 644.8 451 71.6
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 1.5e-182 643.3 467 70.2
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 4.4e-182 641.7 448 73.4
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 5.7e-182 641.3 442 73.8
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 5.7e-182 641.3 457 70.7
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 7.4e-182 641.0 457 71.6
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 7.4e-182 641.0 451 71.8
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 9.7e-182 640.6 456 71.9
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 1.3e-181 640.2 456 70.0
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.7e-181 639.8 487 72.5
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 4.8e-181 638.3 450 70.9
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 6.3e-181 637.9 451 71.8
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 6.3e-181 637.9 455 70.5
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 8.2e-181 637.5 451 71.6
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 1.8e-180 636.3 455 70.1
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 5.3e-180 634.8 456 70.0
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 1.2e-179 633.6 460 70.2
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 3.4e-179 632.1 455 70.8
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 4.5e-179 631.7 433 74.1
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 4.5e-179 631.7 460 69.6
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 5.9e-179 631.3 456 69.7
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 1.1e-177 627.1 452 71.0
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.5e-177 625.9 455 69.7
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 2.5e-177 625.9 451 74.7
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 7.2e-177 624.4 455 69.5
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 9.4e-177 624.0 461 69.0
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 4.7e-176 621.7 456 69.5
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 7.9e-176 620.9 454 69.2
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 7.9e-176 620.9 456 68.4
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 9.7e-174 614.0 458 67.7
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 8.2e-173 610.9 438 71.5
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 8.2e-173 610.9 491 66.0
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 2.4e-172 609.4 446 69.7
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 7.0e-172 607.8 445 69.0
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.6e-171 605.9 447 68.5
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.6e-171 605.9 447 68.7
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 2.6e-171 605.9 452 68.1
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 4.5e-171 605.1 450 68.4
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 9.4e-169 597.4 452 67.3
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 1.2e-168 597.0 447 67.6
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 2.1e-168 596.3 471 64.8
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 3.6e-168 595.5 448 67.6
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 3.6e-168 595.5 460 65.7
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 3.0e-167 592.4 447 67.1
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 1.5e-166 590.1 450 68.2
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 1.5e-166 590.1 450 68.2
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 1.5e-166 590.1 461 65.3
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 5.7e-166 588.2 450 67.3
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 9.7e-166 587.4 551 58.4
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 3.7e-165 585.5 451 66.1
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 8.2e-165 584.3 447 68.0
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 5.3e-164 581.6 456 64.7
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 5.9e-163 578.2 450 64.2
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 3.8e-162 575.5 449 68.4
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.5e-161 573.5 411 71.3
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.5e-161 572.8 458 65.9
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 2.1e-160 569.7 453 64.0
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 2.3e-159 566.2 432 67.6
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 2.3e-159 566.2 453 65.6
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 1.1e-156 557.4 427 67.4
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 7.0e-156 554.7 410 68.8
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 1.7e-154 550.1 443 65.0
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 2.5e-153 546.2 428 69.2
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 3.2e-153 545.8 455 62.2
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 7.0e-148 528.1 451 61.0
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 1.3e-146 523.9 458 60.7
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 7.5e-142 508.1 447 61.1
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 9.2e-140 501.1 457 56.0
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.6e-139 500.4 380 67.9
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 4.3e-137 492.3 462 59.1
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 4.3e-137 492.3 367 67.8
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 1.2e-136 490.7 498 57.4
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.0e-135 485.7 405 63.7
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 4.4e-134 482.3 449 58.6
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 3.7e-133 479.2 463 58.1
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 1.4e-132 477.2 450 58.2
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 4.3e-129 465.7 315 74.9
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 1.2e-128 464.2 445 58.9
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.2e-127 458.8 340 69.4
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 6.4e-125 451.8 359 65.7
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.0e-114 417.9 340 62.6
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 7.3e-113 411.8 359 58.8
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 3.6e-112 409.5 328 66.2
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.7e-106 390.6 474 46.2
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 6.9e-103 378.6 429 52.2
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 9.0e-103 378.3 463 46.0
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 1.2e-99 367.9 267 71.2
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 3.0e-98 363.2 452 49.3
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 8.7e-98 361.7 302 61.9
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 7.4e-97 358.6 471 43.9
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 8.1e-96 355.1 269 66.9
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 8.2e-88 328.6 306 55.6
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 3.4e-78 296.6 281 58.7
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 7.6e-78 295.4 285 56.1
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 1.7e-72 277.7 361 44.9
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.9e-68 264.2 453 37.7
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 3.1e-63 246.9 758 27.0
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 5.3e-63 246.1 414 41.5
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 4.1e-55 219.9 149 72.5
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.4e-47 194.1 174 62.6
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.3e-45 188.3 140 68.6
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 1.0e-37 162.2 444 30.2
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 5.0e-37 159.8 174 53.4
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 1.0e-29 135.6 88 73.9
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 4.7e-27 126.7 67 88.1
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.6e-25 120.9 76 69.7
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 6.4e-24 116.3 105 61.0
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.6e-22 111.7 88 61.4
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 1.7e-21 108.2 511 23.7
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 6.0e-14 83.2 64 64.1
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 1.3e-13 82.0 164 31.7
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 6.2e-11 73.2 113 40.7
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 7.5e-09 66.2 42 64.3


User provided reference genes

Program Settings