Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G975.16 Capsicum annuum HOM05D002412 ORTHO05D002516 1.6e-70 269.2 132 100.0
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 2.2e-51 205.7 175 65.7
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 9.3e-50 200.3 175 64.6
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 2.3e-48 195.7 175 64.0
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.9e-34 149.4 181 54.1
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 5.1e-32 141.4 164 53.7
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 4.5e-28 128.3 186 47.8
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 7.4e-23 110.9 190 43.7
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 9.7e-23 110.5 186 43.0
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 9.7e-23 110.5 163 46.0
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.7e-22 108.6 174 47.1
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 7.7e-20 100.9 172 42.4
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 8.2e-14 80.9 163 38.7
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.4e-13 80.1 180 37.2
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.8e-13 79.7 166 37.3
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 3.1e-13 79.0 157 35.7
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 5.3e-13 78.2 173 37.0
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 5.3e-13 78.2 206 34.5
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 5.3e-13 78.2 161 37.9
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 7.0e-13 77.8 182 35.2
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 1.2e-12 77.0 165 37.0
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 1.2e-12 77.0 171 36.8
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.6e-12 76.6 163 36.8
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 2.6e-12 75.9 176 33.5
Hund05293 Selenicereus undatus HOM05D002412 ORTHO05D002516 4.5e-12 75.1 75 54.7
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 5.9e-12 74.7 161 35.4
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 7.7e-12 74.3 155 36.1
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.3e-11 73.6 74 55.4
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.7e-11 73.2 175 34.9
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 1.7e-11 73.2 164 37.8
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 2.2e-11 72.8 162 36.4
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 2.2e-11 72.8 70 55.7
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 3.8e-11 72.0 177 34.5
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 5.0e-11 71.6 179 34.1
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 1.1e-10 70.5 69 55.1
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 2.5e-10 69.3 82 50.0
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 3.2e-10 68.9 91 47.3
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 3.2e-10 68.9 173 32.9
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 3.2e-10 68.9 178 36.0
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 4.2e-10 68.6 81 53.1
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 5.5e-10 68.2 76 53.9
DCAR_012823 Daucus carota HOM05D002412 ORTHO05D002516 7.2e-10 67.8 78 48.7
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 7.2e-10 67.8 180 33.9
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 9.4e-10 67.4 169 33.1
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 9.4e-10 67.4 159 35.2
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 9.4e-10 67.4 182 33.0
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 1.2e-09 67.0 77 54.5
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.2e-09 67.0 171 31.6
Sabra14G0009000 Salix brachista HOM05D002412 ORTHO05D002516 1.2e-09 67.0 77 51.9
Sed0020406 Sechium edule HOM05D002412 ORTHO05D002516 1.2e-09 67.0 103 38.8
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-09 66.6 174 32.8
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 2.1e-09 66.2 69 56.5
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 2.1e-09 66.2 155 35.5
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.7e-09 65.9 177 31.1
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.7e-09 65.9 80 50.0
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 3.6e-09 65.5 114 42.1
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 3.6e-09 65.5 180 33.9
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 3.6e-09 65.5 89 49.4
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 3.6e-09 65.5 91 49.5
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 8.0e-09 64.3 185 32.4
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 8.0e-09 64.3 182 32.4
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 8.0e-09 64.3 174 31.6
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 8.0e-09 64.3 71 54.9
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 1.4e-08 63.5 180 30.6
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 1.4e-08 63.5 88 46.6
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 1.4e-08 63.5 92 47.8
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 1.4e-08 63.5 93 40.9
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 1.8e-08 63.2 93 46.2
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 1.8e-08 63.2 178 33.1
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.8e-08 63.2 69 50.7
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 2.3e-08 62.8 98 44.9
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 2.3e-08 62.8 102 44.1
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 2.3e-08 62.8 124 37.1
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.3e-08 62.8 68 50.0
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 3.0e-08 62.4 80 52.5
Ca_13210_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 3.0e-08 62.4 75 45.3
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 4.0e-08 62.0 172 32.0
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 4.0e-08 62.0 172 32.0
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 4.0e-08 62.0 94 43.6
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 4.0e-08 62.0 195 28.7
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 4.0e-08 62.0 170 33.5
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 5.2e-08 61.6 182 31.9
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 5.2e-08 61.6 71 52.1
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 5.2e-08 61.6 163 30.1
Ca_24361_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 6.7e-08 61.2 87 37.9
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 6.7e-08 61.2 92 41.3
MSTRG.1024 Avicennia marina HOM05D002412 ORTHO05D002516 8.8e-08 60.8 73 52.1
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 8.8e-08 60.8 119 39.5
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 8.8e-08 60.8 176 33.0
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 8.8e-08 60.8 175 29.7
Peaxi162Scf00003g00288 Petunia axillaris HOM05D002412 ORTHO05D002516 8.8e-08 60.8 67 47.8
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 8.8e-08 60.8 84 45.2
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 8.8e-08 60.8 78 52.6
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.2e-07 60.5 184 32.6
Lalb_Chr22g0355701 Lupinus albus HOM05D002412 ORTHO05D002516 1.2e-07 60.5 65 49.2
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.2e-07 60.5 73 46.6
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 1.5e-07 60.1 72 47.2
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 1.5e-07 60.1 176 32.4
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 1.5e-07 60.1 71 52.1
Sc15g0005620 Simmondsia chinensis HOM05D002412 ORTHO05D002516 1.5e-07 60.1 136 36.0
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 2.0e-07 59.7 182 29.1
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 2.0e-07 59.7 175 30.3
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 2.6e-07 59.3 189 30.7
SGA_v2.0_scaffold225G43055 Striga asiatica HOM05D002412 ORTHO05D002516 2.6e-07 59.3 66 53.0
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 3.3e-07 58.9 97 41.2
Dinv39215 Davidia involucrata HOM05D002412 ORTHO05D002516 3.3e-07 58.9 160 29.4
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 3.3e-07 58.9 67 47.8
unitig_46.g17922 Utricularia gibba HOM05D001230 ORTHO05D001067 3.3e-07 58.9 80 46.2
CSS0009753 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 4.4e-07 58.5 78 51.3
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.4e-07 58.5 83 43.4
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 4.4e-07 58.5 83 43.4
Medtr1g017890 Medicago truncatula HOM05D002412 ORTHO05D002516 4.4e-07 58.5 83 45.8
EL10Ac1g02365 Beta vulgaris HOM05D002412 ORTHO05D002516 5.7e-07 58.2 67 50.7
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 5.7e-07 58.2 90 41.1
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 5.7e-07 58.2 163 30.7
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 5.7e-07 58.2 184 31.5
Rhsim05G0092300 Rhododendron simsii HOM05D002412 ORTHO05D002516 5.7e-07 58.2 66 50.0
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 5.7e-07 58.2 90 46.7
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 7.5e-07 57.8 150 38.7
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 7.5e-07 57.8 77 45.5
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 7.5e-07 57.8 183 29.0
unitig_578.g16152 Utricularia gibba HOM05D002412 ORTHO05D002516 7.5e-07 57.8 57 50.9
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 9.7e-07 57.4 69 50.7
Ah.01g007050 Amaranthus hybridus HOM05D002412 ORTHO05D002516 9.7e-07 57.4 97 37.1
arahy.Tifrunner.gnm1.ann1.QB6IYV Arachis hypogaea HOM05D002412 ORTHO05D002516 9.7e-07 57.4 85 44.7
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 9.7e-07 57.4 169 29.0
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 9.7e-07 57.4 184 31.5
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 9.7e-07 57.4 84 44.0
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 1.3e-06 57.0 82 41.5
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.3e-06 57.0 180 28.9
EL10Ac9g22186 Beta vulgaris HOM05D002412 ORTHO05D002516 1.7e-06 56.6 99 40.4
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.7e-06 56.6 120 35.8
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 2.2e-06 56.2 75 45.3
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.8e-06 55.8 66 50.0
Lalb_Chr06g0165021 Lupinus albus HOM05D002412 ORTHO05D002516 2.8e-06 55.8 89 42.7
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 3.7e-06 55.5 190 27.9
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 4.8e-06 55.1 87 39.1
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 4.8e-06 55.1 103 39.8
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 4.8e-06 55.1 80 42.5
TPR.G13172 Trifolium pratense HOM05D002412 ORTHO05D002516 4.8e-06 55.1 91 44.0
AUR62022466 Chenopodium quinoa HOM05D002412 ORTHO05D002516 6.3e-06 54.7 84 46.4
FvH4_2g32900 Fragaria vesca HOM05D002412 ORTHO05D002516 6.3e-06 54.7 167 29.9
Medtr5g005230 Medicago truncatula HOM05D002412 ORTHO05D002516 6.3e-06 54.7 166 28.3
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 6.3e-06 54.7 119 37.8
RcHm_v2.0_Chr6g0309821 Rosa chinensis HOM05D002412 ORTHO05D002516 6.3e-06 54.7 164 31.7
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 6.3e-06 54.7 101 40.6
Gohir.A06G024600 Gossypium hirsutum HOM05D002412 ORTHO05D002516 8.2e-06 54.3 136 34.6
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 8.2e-06 54.3 69 44.9


User provided reference genes

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