Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.1e-97 360.1 204 100.0
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 3.9e-79 298.5 209 77.5
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.3e-78 295.4 209 80.4
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 9.9e-75 283.9 204 81.4
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.2e-73 278.5 209 73.2
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 5.3e-68 261.5 201 69.2
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 2.6e-67 259.2 204 68.1
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 7.1e-65 251.1 173 72.8
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.2e-64 250.4 172 73.8
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.3e-63 246.9 204 66.7
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.7e-63 246.5 196 67.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 2.3e-63 246.1 196 67.3
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 8.7e-63 244.2 201 66.7
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 2.5e-62 242.7 223 60.1
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 3.3e-62 242.3 202 66.8
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.3e-61 240.4 204 64.2
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.8e-61 239.2 211 64.5
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.8e-61 239.2 204 62.3
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 3.6e-61 238.8 201 65.2
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.8e-61 238.4 193 67.4
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.1e-60 237.3 193 66.3
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.4e-60 236.9 197 64.0
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.4e-60 236.9 204 61.8
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 2.4e-60 236.1 193 66.3
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.4e-60 236.1 204 61.8
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 5.3e-60 235.0 193 63.7
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 6.9e-60 234.6 200 63.0
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 9.0e-60 234.2 194 66.0
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 2.6e-59 232.6 195 63.6
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.6e-59 232.6 201 63.2
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 4.5e-59 231.9 193 62.7
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 5.8e-59 231.5 193 64.2
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 7.6e-59 231.1 154 76.0
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 7.6e-59 231.1 194 64.9
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 9.9e-59 230.7 204 62.7
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.3e-58 230.3 159 73.0
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.7e-58 229.9 159 73.0
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.7e-58 229.9 165 70.3
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.7e-58 229.9 165 70.3
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.2e-58 229.6 232 55.6
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.2e-58 229.6 158 73.4
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 2.9e-58 229.2 161 68.9
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 2.9e-58 229.2 193 65.3
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.9e-58 229.2 193 61.7
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 2.9e-58 229.2 159 73.0
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 3.8e-58 228.8 159 73.0
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 3.8e-58 228.8 193 64.8
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 4.9e-58 228.4 198 61.1
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 4.9e-58 228.4 165 69.7
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 4.9e-58 228.4 201 63.2
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 6.4e-58 228.0 165 69.7
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 6.4e-58 228.0 165 69.7
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 6.4e-58 228.0 162 69.1
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 8.4e-58 227.6 193 64.8
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 8.4e-58 227.6 161 73.3
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 8.4e-58 227.6 193 62.7
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.1e-57 227.3 161 72.7
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.1e-57 227.3 159 71.1
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 1.4e-57 226.9 203 60.6
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.4e-57 226.1 159 71.1
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.4e-57 226.1 159 71.1
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.4e-57 226.1 165 70.9
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 4.2e-57 225.3 196 61.7
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.2e-57 225.3 161 68.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.2e-57 225.3 165 70.3
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 5.5e-57 224.9 160 73.1
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 5.5e-57 224.9 190 63.7
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 7.1e-57 224.6 193 64.2
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 7.1e-57 224.6 194 62.9
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 7.1e-57 224.6 161 72.0
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 9.3e-57 224.2 159 70.4
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 9.3e-57 224.2 159 70.4
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 9.3e-57 224.2 159 70.4
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 9.3e-57 224.2 169 70.4
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.2e-56 223.8 161 72.0
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.2e-56 223.8 201 60.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 2.1e-56 223.0 161 69.6
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.1e-56 223.0 200 62.0
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 2.7e-56 222.6 161 71.4
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.5e-56 222.2 165 69.7
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 3.5e-56 222.2 193 61.7
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 4.6e-56 221.9 159 71.1
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 6.0e-56 221.5 159 70.4
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.0e-55 220.7 151 72.2
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.3e-55 220.3 161 69.6
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.8e-55 219.9 159 69.8
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.8e-55 219.9 163 68.7
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.8e-55 219.9 261 54.8
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 2.3e-55 219.5 196 61.7
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.9e-55 218.8 161 68.9
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.9e-55 218.8 161 68.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 5.1e-55 218.4 193 63.2
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 6.7e-55 218.0 196 59.7
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 8.7e-55 217.6 168 68.5
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.9e-54 216.5 193 59.1
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.9e-54 216.5 157 71.3
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 4.3e-54 215.3 167 67.7
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.3e-53 213.8 171 66.7
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.1e-53 213.0 171 64.9
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 2.1e-53 213.0 168 64.3
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.1e-53 213.0 194 57.7
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.7e-53 212.2 186 62.4
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 6.2e-53 211.5 178 63.5
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 6.2e-53 211.5 164 67.7
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 8.1e-53 211.1 171 65.5
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 8.1e-53 211.1 151 70.2
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 1.1e-52 210.7 164 68.3
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.8e-52 209.9 167 65.9
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 1.8e-52 209.9 167 62.9
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 3.1e-52 209.1 155 69.0
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 6.9e-52 208.0 163 65.6
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 2.6e-51 206.1 188 59.6
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.4e-51 205.7 160 67.5
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 5.8e-51 204.9 147 70.7
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.3e-50 203.8 193 59.1
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 3.8e-50 202.2 193 57.5
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 6.5e-50 201.4 196 57.7
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 8.4e-50 201.1 186 60.2
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.4e-49 200.3 171 57.9
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 2.5e-49 199.5 160 64.4
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.5e-49 199.5 151 66.9
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 9.3e-49 197.6 196 55.1
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-48 197.2 149 69.1
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 7.9e-48 194.5 150 65.3
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 7.9e-48 194.5 150 65.3
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.0e-47 194.1 150 64.7
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.8e-47 193.4 168 57.7
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.3e-47 193.0 128 75.0
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 3.9e-47 192.2 137 71.5
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.9e-46 189.9 122 77.0
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 1.9e-46 189.9 132 72.7
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.4e-44 183.7 128 74.2
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 5.9e-43 178.3 120 70.8
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.0e-42 177.6 143 67.8
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.3e-42 177.2 120 72.5
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.2e-42 176.4 120 72.5
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.9e-41 173.3 119 73.1
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 5.5e-41 171.8 121 74.4
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.5e-41 171.8 120 72.5
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.6e-40 168.7 151 54.3
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 1.0e-39 167.5 149 56.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.8e-39 166.8 113 76.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.1e-38 164.1 130 62.3
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 1.5e-38 163.7 145 56.6
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.7e-38 161.8 157 54.1
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.3e-37 160.6 140 56.4
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 1.6e-37 160.2 151 59.6
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.6e-37 160.2 113 69.9
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 9.0e-36 154.5 159 50.3
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.0e-34 151.0 148 51.4
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.0e-34 151.0 121 63.6
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 5.0e-34 148.7 159 47.8
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 2.0e-30 136.7 85 78.8
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 5.7e-30 135.2 134 55.2
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.1e-24 116.7 98 62.2
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.4e-22 109.0 111 51.4
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.6e-19 99.8 149 43.6
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.5e-17 94.0 90 57.8
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.7e-16 89.7 98 45.9
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 4.5e-11 72.4 46 73.9
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 4.5e-11 72.4 46 73.9
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.9e-10 69.7 47 70.2
CAN.G407.122 Capsicum annuum HOM05D000018 ORTHO05D007339 3.8e-10 69.3 74 79.7
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 7.2e-09 65.1 44 70.5
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.2e-08 64.3 46 69.6
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 5.7e-06 55.5 45 55.6


User provided reference genes

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