Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2537.3 1272 100.0
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2438.3 1272 95.9
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2437.5 1272 95.8
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2431.8 1272 95.7
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2407.1 1271 94.5
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 2254.2 1272 89.5
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2233.4 1271 85.8
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2215.7 1273 85.4
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2213.7 1272 85.2
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2210.3 1272 85.1
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2208.7 1270 85.7
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2208.3 1273 85.2
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2207.9 1272 85.0
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2206.4 1273 85.2
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2203.7 1272 84.7
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2200.2 1270 85.0
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2199.9 1267 84.9
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2197.5 1273 84.6
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2197.5 1270 85.0
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2192.5 1272 84.7
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2190.2 1270 84.4
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2188.3 1272 84.8
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2188.3 1270 84.6
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2183.3 1271 83.8
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2181.8 1271 83.6
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2179.1 1270 84.8
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2176.4 1270 83.3
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2174.8 1271 83.4
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2174.4 1270 84.3
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2174.4 1270 84.3
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2174.1 1271 83.6
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2173.3 1270 83.3
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2172.9 1270 83.1
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2172.9 1266 84.1
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2171.4 1269 83.8
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2169.8 1271 83.5
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2169.4 1270 83.8
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2168.7 1270 83.9
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2163.7 1270 84.3
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2160.6 1270 83.6
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2158.3 1270 84.1
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2157.5 1270 82.6
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2156.3 1270 83.9
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2154.8 1270 82.3
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2152.1 1242 84.9
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2150.6 1270 81.9
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2150.6 1270 82.1
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2149.8 1270 81.8
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2149.8 1270 83.1
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2149.4 1270 81.9
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2149.4 1265 84.1
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2149.0 1270 81.9
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2147.9 1270 82.8
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2145.9 1270 81.8
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2144.8 1271 83.6
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2144.0 1272 82.4
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2143.6 1270 82.0
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2142.9 1276 82.9
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2142.9 1270 82.0
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2141.7 1269 82.9
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2139.8 1269 82.7
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2136.7 1270 81.9
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2135.5 1271 82.4
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2135.1 1271 82.2
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2134.4 1276 82.4
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2134.4 1270 81.6
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2134.4 1276 82.3
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2130.5 1273 82.0
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2129.8 1272 82.3
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2128.6 1270 83.1
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2126.7 1270 81.4
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2124.4 1267 82.0
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2120.1 1273 81.7
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2120.1 1271 82.0
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2119.4 1271 81.8
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2119.0 1269 81.4
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2117.4 1272 82.0
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2116.3 1271 81.8
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2112.0 1270 81.8
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2107.8 1211 85.6
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2105.9 1252 82.4
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2104.7 1252 82.3
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2102.4 1271 81.2
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2097.8 1272 80.4
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2097.4 1273 80.8
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2063.5 1274 80.1
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2062.7 1272 80.6
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2059.3 1271 80.1
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2045.8 1270 79.8
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2034.6 1273 77.8
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2031.5 1271 79.0
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2030.8 1270 77.8
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2015.0 1269 78.7
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1981.8 1271 80.6
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1953.3 1273 76.0
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1945.2 1169 82.5
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1908.6 1271 72.9
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1878.2 1274 73.7
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1875.1 1270 72.8
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1863.6 1256 74.0
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1837.8 1072 82.6
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1835.5 1194 76.9
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1828.9 1274 71.0
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1796.2 1273 72.0
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1790.4 1092 80.9
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1783.1 1130 79.0
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1614.4 966 81.1
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1580.1 1047 74.1
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1536.5 1322 60.7
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1409.0 816 84.2
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1358.2 1271 58.9
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1320.1 1343 53.6
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1311.6 1391 53.1
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1250.3 728 83.9
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1148.3 1026 61.6
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1120.9 814 71.5
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 9.3e-264 914.4 575 79.7
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 1.8e-254 883.6 1252 40.8
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.9e-254 882.5 502 86.3
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 8.8e-222 775.0 528 73.9
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-217 760.0 657 58.9
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 5.2e-198 696.0 458 77.7
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.7e-180 636.7 389 81.7
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 6.9e-134 483.0 359 68.8
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 2.4e-118 431.4 312 72.4
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 1.4e-105 389.0 270 73.3
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 1.5e-83 315.8 480 43.3
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.7e-71 275.8 170 78.2
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 5.4e-70 270.8 170 77.6
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 2.1e-69 268.9 170 77.1
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 9.2e-62 243.4 138 86.2
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 9.9e-56 223.4 234 52.1
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 6.2e-50 204.1 116 79.3
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 5.8e-40 171.0 152 65.1
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 8.4e-39 167.2 91 86.8
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 2.5e-35 155.6 182 50.0
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 1.5e-32 146.4 99 64.6
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 5.3e-25 121.3 104 58.7


User provided reference genes

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