Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 3.8e-117 424.9 215 100.0
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.9e-77 292.4 223 70.9
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.5e-73 277.7 217 69.1
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.9e-68 263.1 236 63.1
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 3.2e-68 262.3 207 67.1
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.7e-67 258.5 205 66.8
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.0e-65 253.1 200 66.5
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 8.3e-64 247.7 194 67.5
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.0e-62 243.0 200 65.5
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.0e-62 243.0 207 62.8
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.7e-62 242.7 202 64.4
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 2.7e-62 242.7 200 65.0
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 6.6e-61 238.0 217 61.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.9e-60 236.5 208 63.0
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.3e-60 235.7 213 62.4
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.3e-60 235.3 206 62.6
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.3e-60 235.3 206 62.6
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.6e-59 233.4 215 60.5
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.6e-59 233.4 209 61.7
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.8e-59 232.6 217 59.0
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 6.1e-59 231.5 199 61.8
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 8.0e-59 231.1 159 72.3
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 6.8e-58 228.0 231 57.6
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 8.9e-58 227.6 229 58.1
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.5e-57 226.9 208 61.1
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.6e-57 226.1 202 63.4
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 3.4e-57 225.7 213 61.0
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 7.5e-57 224.6 206 57.3
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.8e-57 224.2 207 61.8
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 9.8e-57 224.2 207 61.8
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.7e-56 223.4 213 59.6
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.7e-56 223.4 207 61.4
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.7e-56 223.4 218 59.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.9e-56 222.6 214 57.0
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 2.9e-56 222.6 214 59.3
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.9e-56 222.6 214 59.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.7e-56 222.2 212 59.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.7e-56 222.2 205 61.5
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.7e-56 222.2 213 59.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.9e-56 221.9 217 59.4
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 6.4e-56 221.5 202 61.4
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 8.3e-56 221.1 209 57.9
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.8e-55 219.9 213 59.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 3.2e-55 219.2 215 56.7
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 3.2e-55 219.2 213 58.7
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 4.1e-55 218.8 203 58.1
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 4.1e-55 218.8 211 59.7
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.2e-54 217.2 208 56.7
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.6e-54 216.9 204 60.8
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.0e-54 216.5 221 56.1
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.7e-54 216.1 200 59.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.7e-54 216.1 202 57.9
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.5e-54 215.7 208 58.2
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.5e-54 215.7 303 45.9
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.6e-54 215.3 218 56.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 5.9e-54 214.9 206 59.2
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.9e-54 214.9 180 64.4
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 7.8e-54 214.5 202 60.4
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 7.8e-54 214.5 220 57.7
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 7.8e-54 214.5 194 62.9
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.0e-53 214.2 204 57.4
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.0e-53 212.6 230 53.9
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.0e-53 212.6 200 58.0
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 3.9e-53 212.2 208 56.2
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.9e-53 212.2 201 57.7
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.0e-53 211.8 199 59.8
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 5.0e-53 211.8 200 57.5
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 6.6e-53 211.5 190 57.9
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 6.6e-53 211.5 203 57.6
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 6.6e-53 211.5 202 57.4
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.1e-52 210.7 212 55.2
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.1e-52 210.7 220 56.4
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.5e-52 210.3 219 56.6
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.5e-52 209.5 206 56.3
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.5e-52 209.5 206 56.3
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.3e-52 209.1 201 57.2
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 3.3e-52 209.1 215 54.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 4.3e-52 208.8 202 55.9
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 7.3e-52 208.0 216 53.7
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.2e-51 207.2 205 55.1
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.6e-51 206.8 199 55.3
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.6e-51 206.8 221 54.8
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 4.7e-51 205.3 200 56.5
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.7e-51 205.3 207 57.0
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 8.0e-51 204.5 209 56.5
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.4e-50 203.8 200 57.0
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.4e-50 203.8 221 54.3
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.8e-50 203.4 204 56.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.8e-50 203.4 199 56.3
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.8e-50 203.4 207 57.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.3e-50 203.0 203 57.1
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 3.1e-50 202.6 221 52.9
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 8.9e-50 201.1 203 56.2
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.2e-49 200.7 221 55.2
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.5e-49 200.3 205 55.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.5e-49 200.3 216 55.6
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.0e-49 199.9 208 56.7
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.3e-48 197.2 210 56.7
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.7e-48 196.8 203 54.7
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.9e-48 196.1 197 55.3
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.9e-47 193.4 185 59.5
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.9e-47 193.4 222 51.4
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 5.4e-47 191.8 162 63.0
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.8e-46 188.0 207 50.7
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 3.0e-45 186.0 210 50.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 5.0e-45 185.3 213 53.1
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 8.6e-45 184.5 208 51.4
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.1e-43 179.9 153 63.4
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 4.7e-43 178.7 228 46.9
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.2e-41 174.1 211 49.3
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 4.9e-40 168.7 215 47.9
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.4e-39 167.2 211 47.9
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 3.2e-39 166.0 210 47.6
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 8.6e-37 157.9 193 48.2
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.1e-36 157.5 191 49.2
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 4.7e-35 152.1 211 42.7
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.1e-34 151.0 169 50.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.4e-34 150.6 205 43.9
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.3e-34 149.8 217 43.3
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.1e-34 149.4 180 49.4
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 9.9e-33 144.4 207 41.1
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 4.9e-32 142.1 198 43.9
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.4e-31 139.8 135 55.6
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.2e-31 139.4 117 59.0
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 3.2e-31 139.4 190 42.6
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 7.1e-31 138.3 145 49.7
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.6e-30 137.1 140 53.6
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.0e-29 134.4 201 41.3
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.0e-29 134.4 219 37.4
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.1e-28 131.0 139 45.3
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.1e-28 131.0 189 46.6
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 3.3e-28 129.4 218 37.2
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 4.3e-28 129.0 100 66.0
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-27 127.5 199 41.7
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.8e-27 126.3 103 58.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.7e-24 117.1 101 50.5
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.2e-24 116.7 185 41.6
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 7.1e-23 111.7 130 43.1
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.2e-22 110.9 87 48.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.1e-22 110.2 160 43.8
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.0e-21 107.8 126 52.4
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 8.7e-21 104.8 126 51.6
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.1e-20 104.4 198 34.3
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.9e-20 103.6 142 35.9
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 7.3e-20 101.7 198 35.9
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 9.6e-20 101.3 98 46.9
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.9e-18 95.1 123 39.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.2e-17 94.4 84 47.6
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 3.4e-17 92.8 99 47.5
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.8e-17 92.0 123 39.0
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.8e-13 80.5 115 50.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 1.9e-12 77.0 99 45.5
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.3e-11 74.3 109 40.4
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.4e-10 70.1 112 49.1
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.0e-09 67.0 176 33.0
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 4.9e-08 62.4 84 45.2
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 1.4e-07 60.8 68 50.0
Oeu041536.1 Olea europaea HOM05D004429 ORTHO05D288779 7.9e-06 55.1 93 36.6


User provided reference genes

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