Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 4.5e-224 781.2 464 100.0
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 2.3e-180 636.0 492 82.5
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 1.2e-179 633.6 509 78.8
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.3e-143 513.8 484 72.5
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 2.0e-123 446.8 421 66.3
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.4e-123 446.0 428 68.0
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.7e-122 443.7 456 64.9
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 2.2e-122 443.4 424 68.6
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 3.8e-122 442.6 421 67.2
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 1.1e-121 441.0 423 67.4
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 2.5e-121 439.9 445 65.6
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 4.2e-121 439.1 424 69.1
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 1.6e-120 437.2 416 69.0
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 1.6e-120 437.2 443 66.6
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 2.7e-120 436.4 431 65.0
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 4.6e-120 435.6 433 65.4
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 6.0e-120 435.3 431 65.7
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 6.0e-120 435.3 447 66.7
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 2.3e-119 433.3 421 65.3
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 3.9e-119 432.6 421 72.0
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 6.7e-119 431.8 425 63.8
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 1.1e-118 431.0 426 65.0
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.5e-118 430.6 427 67.2
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 1.5e-118 430.6 431 64.7
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 1.3e-117 427.6 431 63.8
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.6e-117 427.2 475 62.3
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.8e-117 425.6 431 65.2
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.4e-116 424.1 442 64.0
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 2.4e-116 423.3 448 62.9
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 3.1e-116 422.9 417 67.9
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 4.1e-116 422.5 432 65.5
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 6.9e-116 421.8 429 63.2
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 9.0e-116 421.4 424 66.5
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 1.5e-115 420.6 428 64.7
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.0e-115 420.2 431 65.7
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 2.0e-115 420.2 427 67.0
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 2.0e-115 420.2 425 66.1
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 4.5e-115 419.1 424 68.2
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 3.8e-114 416.0 422 65.2
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 5.0e-114 415.6 424 67.7
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 3.2e-113 412.9 477 61.4
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 5.5e-113 412.1 431 64.5
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 7.2e-113 411.8 423 65.0
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.6e-112 410.6 453 62.9
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 2.1e-112 410.2 403 65.3
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 4.6e-112 409.1 423 65.2
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 4.6e-112 409.1 425 65.9
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 4.6e-112 409.1 430 65.8
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 4.6e-112 409.1 428 63.1
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 1.3e-111 407.5 430 62.8
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 2.3e-111 406.8 478 58.2
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 3.0e-111 406.4 426 65.3
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 1.9e-110 403.7 433 62.6
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.3e-109 401.0 454 61.7
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.6e-109 400.6 459 61.4
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 2.8e-109 399.8 422 61.8
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 6.3e-109 398.7 432 64.8
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 6.3e-109 398.7 292 81.2
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.1e-108 397.9 406 65.3
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 1.1e-108 397.9 432 63.4
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 1.1e-108 397.9 418 63.6
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 1.8e-108 397.1 425 63.3
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 1.8e-108 397.1 426 64.6
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 3.1e-108 396.4 385 67.0
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 3.1e-108 396.4 378 69.3
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 6.9e-108 395.2 430 64.2
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 9.0e-108 394.8 443 62.1
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 9.0e-108 394.8 466 61.2
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 9.0e-108 394.8 443 62.1
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 4.5e-107 392.5 433 62.6
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 5.9e-107 392.1 432 62.7
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 5.9e-107 392.1 424 65.1
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 1.0e-106 391.3 428 62.1
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 2.9e-106 389.8 473 62.2
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 2.5e-105 386.7 283 82.3
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 9.4e-105 384.8 488 57.0
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.6e-104 382.9 426 61.5
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 1.4e-103 380.9 432 63.2
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 2.0e-102 377.1 426 59.9
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 9.7e-102 374.8 431 61.5
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 1.7e-101 374.0 426 61.5
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 2.8e-101 373.2 432 61.1
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.7e-101 372.9 417 60.4
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 6.3e-101 372.1 473 60.7
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 1.4e-97 360.9 449 57.2
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 4.2e-97 359.4 437 59.5
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 2.1e-96 357.1 611 45.7
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.2e-88 331.3 368 58.4
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 2.1e-88 330.5 430 53.3
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 1.4e-87 327.8 417 61.2
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 6.7e-87 325.5 373 61.1
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 8.2e-85 318.5 434 53.2
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 3.1e-84 316.6 429 53.8
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 3.1e-84 316.6 429 53.8
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 5.3e-84 315.8 380 59.7
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 5.5e-81 305.8 419 53.0
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 4.4e-78 296.2 444 50.7
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.3e-77 294.7 291 62.9
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 4.1e-76 289.7 290 64.1
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 1.2e-75 288.1 429 50.3
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 3.5e-75 286.6 285 64.2
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 7.2e-73 278.9 425 53.6
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 4.7e-72 276.2 332 59.0
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 3.0e-71 273.5 276 63.4
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 3.7e-69 266.5 296 61.1
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 8.6e-66 255.4 322 59.3
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 6.1e-64 249.2 342 49.4
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 4.0e-63 246.5 178 77.0
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 1.6e-59 234.6 566 39.6
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 7.8e-59 232.3 372 47.3
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 1.6e-56 224.6 472 48.1
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 8.0e-56 222.2 321 52.0
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 2.7e-51 207.2 362 50.8
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 1.3e-45 188.3 451 39.9
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 2.9e-45 187.2 198 72.7
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 1.6e-35 154.8 103 83.5
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 2.4e-31 141.0 213 47.4
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 2.4e-31 141.0 108 69.4
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 8.9e-31 139.0 359 31.5
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.3e-29 135.2 87 83.9
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.9e-29 134.0 119 67.2
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 1.0e-26 125.6 370 43.8
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 1.3e-24 118.6 143 60.8
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 5.3e-23 113.2 169 58.0
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 7.6e-22 109.4 89 66.3
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 1.7e-21 108.2 92 77.2
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 7.1e-20 102.8 56 83.9
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.3e-16 92.0 77 62.3
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.8e-16 90.9 95 64.2
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.3e-15 86.7 64 70.3
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.6e-14 84.3 96 55.2
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 7.1e-12 76.3 116 45.7
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.1e-09 68.9 88 47.7
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 4.3e-09 67.0 43 76.7
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 4.0e-07 60.5 39 79.5
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 5.3e-07 60.1 178 28.7


User provided reference genes

Program Settings