Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G965.9 Capsicum annuum HOM05D001070 ORTHO05D002096 1.1e-98 363.6 236 100.0
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 1.7e-49 200.3 187 63.6
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.2e-49 199.9 160 70.6
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.2e-49 199.9 160 70.6
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.2e-49 199.9 160 70.6
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.2e-49 199.9 160 70.6
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.2e-49 199.9 160 70.6
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.2e-49 199.9 160 70.6
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.2e-49 199.9 160 70.6
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 6.5e-46 188.3 150 71.3
CAN.G1045.8 Capsicum annuum HOM05D001070 ORTHO05D002096 2.7e-44 183.0 170 75.3
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 1.4e-43 180.6 120 95.8
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.4e-42 176.0 187 61.0
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.3e-41 171.4 160 63.8
Solyc11g044680.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-40 171.0 151 66.2
Solyc00g500040.1 Solanum lycopersicum HOM05D001070 ORTHO05D013014 3.1e-40 169.5 143 67.1
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 1.3e-38 164.1 118 76.3
CAN.G134.9 Capsicum annuum HOM05D001070 ORTHO05D002096 2.9e-38 162.9 175 68.0
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 4.7e-36 155.6 136 78.7
Nitab4.5_0002628g0020 Nicotiana tabacum HOM05D001070 ORTHO05D002096 8.9e-35 151.4 131 67.2
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.9e-33 146.4 109 76.1
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-32 144.4 106 74.5
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.0e-32 141.7 151 60.3
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 6.6e-30 135.2 157 53.5
Peaxi162Scf00130g00416 Petunia axillaris HOM05D001070 ORTHO05D002096 6.6e-30 135.2 103 71.8
Peaxi162Scf00536g00047 Petunia axillaris HOM05D001070 ORTHO05D002096 6.6e-30 135.2 103 71.8
Peaxi162Scf00338g00618 Petunia axillaris HOM05D001070 ORTHO05D002096 7.3e-29 131.7 115 66.1
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 4.0e-27 125.9 120 65.0
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 4.0e-27 125.9 120 65.0
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 4.4e-26 122.5 146 56.2
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 4.4e-26 122.5 146 56.2
Oeu010690.1 Olea europaea HOM05D001070 ORTHO05D002096 1.4e-24 117.5 146 54.1
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 2.4e-24 116.7 289 41.5
Solyc02g011860.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.2e-24 116.3 99 69.7
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 1.3e-22 110.9 140 53.6
Oeu022558.1 Olea europaea HOM05D001070 ORTHO05D002096 2.3e-22 110.2 147 52.4
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 3.9e-22 109.4 120 68.3
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.5e-21 104.8 142 51.4
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.1e-20 103.6 124 57.3
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.1e-20 103.6 165 46.1
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.1e-20 103.6 165 46.1
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.1e-20 103.6 165 46.1
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.1e-20 103.6 165 46.1
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.1e-20 103.6 165 46.1
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.1e-20 103.6 165 46.1
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.1e-20 103.6 165 46.1
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 2.8e-20 103.2 143 64.3
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.8e-19 100.5 124 56.5
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.9e-19 98.2 81 69.1
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.4e-18 95.9 85 65.9
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 5.8e-18 95.5 124 54.0
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 7.5e-18 95.1 142 54.9
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 9.8e-18 94.7 143 50.3
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-17 92.4 143 49.0
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-17 92.4 143 49.0
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-17 92.4 143 49.0
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-17 92.4 143 49.0
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 4.1e-16 89.4 93 61.3
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 7.1e-16 88.6 98 58.2
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 7.1e-16 88.6 98 58.2
BraSC138t45529Z Brassica rapa HOM05D001070 ORTHO05D002096 1.6e-15 87.4 142 47.9
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 1.0e-14 84.7 105 67.6
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 2.3e-14 83.6 126 50.0
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 2.3e-14 83.6 126 50.0
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.0e-14 83.2 110 52.7
Sed0002593 Sechium edule HOM05D001070 ORTHO05D002096 5.1e-14 82.4 101 67.3
Sed0025207 Sechium edule HOM05D001070 ORTHO05D002096 5.1e-14 82.4 101 67.3
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 6.6e-14 82.0 58 75.9
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.1e-13 81.3 121 52.1
Nitab4.5_0000172g2260 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.1e-13 81.3 70 67.1
Sabra06G0005100 Salix brachista HOM05D001711 ORTHO05D002847 1.9e-13 80.5 77 62.3
Oeu023335.1 Olea europaea HOM05D001070 ORTHO05D002096 4.3e-13 79.3 94 55.3
ScUNg0000260 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.2e-12 77.8 106 57.5
TAR626G0349 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.2e-12 77.8 105 61.9
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 2.1e-12 77.0 165 44.8
CAN.G1298.17 Capsicum annuum HOM05D001070 ORTHO05D004271 2.8e-12 76.6 69 88.4
TAR624G0722 Trochodendron aralioides HOM05D001070 ORTHO05D002096 3.6e-12 76.3 102 62.7
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 6.2e-12 75.5 149 43.6
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 1.1e-11 74.7 77 71.4
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 1.1e-11 74.7 77 71.4
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.1e-11 74.7 77 71.4
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.0e-11 72.8 106 52.8
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.0e-11 72.8 104 51.9
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 6.8e-11 72.0 85 52.9
RcHm_v2.0_Chr4g0392791 Rosa chinensis HOM05D001070 ORTHO05D002096 1.2e-10 71.2 79 75.9
EL10Ac4g08269 Beta vulgaris HOM05D001070 ORTHO05D002096 1.5e-10 70.9 103 47.6
Solyc08g043160.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.4e-10 69.7 70 61.4
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.9e-10 68.2 108 50.0
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 1.3e-09 67.8 79 53.2
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 1.3e-09 67.8 79 53.2
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 1.3e-09 67.8 79 53.2
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 1.3e-09 67.8 79 53.2
BolC9t56919H Brassica oleracea HOM05D001070 ORTHO05D002096 6.4e-09 65.5 142 41.5
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 1.1e-08 64.7 102 46.1
Sed0000142 Sechium edule HOM05D001070 ORTHO05D002096 1.4e-08 64.3 131 55.0
Sc04g0003130 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.4e-08 64.3 67 59.7
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.9e-08 63.9 134 41.8
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 2.4e-08 63.5 143 42.0
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 2.4e-08 63.5 143 42.0
Sed0025623 Sechium edule HOM05D001070 ORTHO05D002096 7.1e-08 62.0 120 57.5
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 9.2e-08 61.6 67 52.2
Nitab4.5_0003632g0010 Nicotiana tabacum HOM05D008537 ORTHO05D010652 9.2e-08 61.6 36 86.1
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 9.2e-08 61.6 32 93.8
Sed0020782 Sechium edule HOM05D001070 ORTHO05D002096 9.2e-08 61.6 54 68.5
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 1.6e-07 60.8 30 100.0
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 1.6e-07 60.8 30 100.0
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 1.6e-07 60.8 30 100.0
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 1.6e-07 60.8 30 100.0
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 1.6e-07 60.8 30 100.0
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 1.6e-07 60.8 30 100.0
Gohir.1Z050666 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.6e-07 60.8 30 100.0
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.7e-07 60.1 102 56.9
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.7e-07 60.1 102 56.9
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 3.5e-07 59.7 67 55.2
Migut.D01388 Erythranthe guttata HOM05D001070 ORTHO05D002096 4.6e-07 59.3 30 96.7
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 4.6e-07 59.3 31 93.5
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 6.0e-07 58.9 31 90.3
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 6.0e-07 58.9 31 90.3
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.0e-07 58.9 30 93.3
Nitab4.5_0001152g0850 Nicotiana tabacum HOM05D011856 ORTHO05D013014 6.0e-07 58.9 36 83.3
Oeu012767.1 Olea europaea HOM05D001070 ORTHO05D002096 6.0e-07 58.9 52 69.2
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 7.8e-07 58.5 31 90.3
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 7.8e-07 58.5 31 90.3
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 7.8e-07 58.5 31 90.3
Peaxi162Scf00629g00021 Petunia axillaris HOM05D001032 ORTHO05D000907 7.8e-07 58.5 84 46.4
ScUNg0001540 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.0e-06 58.2 89 56.2
Oeu010689.1 Olea europaea HOM05D011856 ORTHO05D013014 2.3e-06 57.0 49 65.3
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 6.6e-06 55.5 104 43.3


User provided reference genes

Program Settings