Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 9.1e-45 183.3 102 100.0
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 1.6e-41 172.6 102 96.1
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 1.6e-41 172.6 102 96.1
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 1.6e-41 172.6 102 96.1
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 3.0e-40 168.3 102 94.1
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 4.4e-39 164.5 102 92.2
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 90.2
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 1.7e-38 162.5 102 91.2
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 1.7e-38 162.5 102 91.2
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 89.2
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.2e-38 162.2 100 90.0
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 89.2
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 89.2
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 89.2
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 89.2
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 89.2
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-38 162.2 100 90.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.2e-38 162.2 100 90.0
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 90.2
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 3.7e-38 161.4 102 89.2
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 4.8e-38 161.0 101 90.1
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.2e-38 160.2 102 89.2
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.2e-38 160.2 102 89.2
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.2e-38 160.2 102 89.2
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.2e-38 160.2 102 89.2
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 8.2e-38 160.2 102 90.2
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 8.2e-38 160.2 102 90.2
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 8.2e-38 160.2 102 90.2
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-37 159.8 102 88.2
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 1.4e-37 159.5 102 90.2
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 2.4e-37 158.7 102 87.3
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 4.1e-37 157.9 102 88.2
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 88.2
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 9.1e-37 156.8 102 89.2
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 9.1e-37 156.8 102 89.2
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 9.1e-37 156.8 102 89.2
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 2.0e-36 155.6 102 87.3
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 2.0e-36 155.6 102 87.3
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 3.5e-36 154.8 102 87.3
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 5.9e-36 154.1 102 86.3
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 5.9e-36 154.1 102 85.3
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.0e-35 153.3 102 87.3
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 1.5e-34 149.4 102 87.3
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.2e-34 147.9 102 83.3
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 2.7e-33 145.2 100 81.0
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 6.1e-33 144.1 102 81.4
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 6.1e-33 144.1 102 83.3
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 6.1e-33 144.1 102 80.4
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 8.0e-33 143.7 98 79.6
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.0e-32 143.3 91 89.0
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 1.8e-32 142.5 92 87.0
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 1.8e-32 142.5 92 87.0
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 2.3e-32 142.1 93 84.9
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 2.3e-32 142.1 93 84.9
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 5.2e-32 141.0 102 78.4
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 2.6e-31 138.7 95 84.2
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 5.4e-29 131.0 95 80.0
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 5.4e-29 131.0 82 87.8
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 1.5e-26 122.9 102 76.5
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 1.5e-26 122.9 102 76.5
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 2.6e-23 112.1 102 69.6
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 3.4e-23 111.7 99 72.7
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 4.9e-22 107.8 101 69.3
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 6.3e-22 107.5 101 68.3
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 3.5e-20 101.7 67 82.1
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-20 101.7 66 81.8
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 5.9e-20 100.9 65 84.6
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 5.9e-20 100.9 76 78.9
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 1.7e-19 99.4 66 80.3
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 3.8e-19 98.2 66 78.8
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.8e-19 98.2 76 76.3
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 1.1e-18 96.7 62 82.3
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.9e-18 95.9 75 76.0
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 4.3e-18 94.7 67 80.6
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 4.3e-18 94.7 77 72.7
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 2.8e-17 92.0 58 84.5
Lsat_1_v5_gn_6_54101 Lactuca sativa HOM05D001200 ORTHO05D009778 3.6e-17 91.7 74 74.3
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 4.7e-17 91.3 60 86.7
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 1.4e-16 89.7 59 84.7
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 2.3e-16 89.0 54 83.3
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 6.8e-16 87.4 102 59.8
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 8.9e-16 87.0 73 65.8
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 1.5e-15 86.3 96 62.5
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 5.8e-15 84.3 55 83.6
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 2.2e-14 82.4 52 86.5
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 2.2e-14 82.4 52 86.5
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 6.4e-14 80.9 51 86.3
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 1.4e-13 79.7 77 67.5
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 3.2e-13 78.6 47 93.6
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 5.4e-13 77.8 53 84.9
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 7.0e-13 77.4 51 84.3
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 1.0e-11 73.6 52 75.0
SMO086G0019 Selaginella moellendorffii HOM05D001200 ORTHO05D009778 6.2e-09 64.3 100 47.0
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 3.1e-08 62.0 41 78.0
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 7.5e-07 57.4 41 78.0


User provided reference genes

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