Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 6.0e-73 277.3 133 100.0
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 3.5e-65 251.5 133 92.5
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 3.5e-65 251.5 133 92.5
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 4.3e-63 244.6 133 90.2
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 5.7e-63 244.2 133 91.0
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 9.7e-63 243.4 133 91.0
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 1.3e-62 243.0 133 89.5
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 4.8e-62 241.1 133 90.2
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 1.4e-61 239.6 133 89.5
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 1.4e-61 239.6 132 89.4
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 1.4e-61 239.6 132 89.4
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 3.1e-61 238.4 133 89.5
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 3.1e-61 238.4 133 89.5
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 3.1e-61 238.4 133 89.5
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 9.0e-61 236.9 132 88.6
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-60 236.1 133 88.0
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 1.5e-60 236.1 133 88.7
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 2.6e-60 235.3 132 87.9
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-60 235.0 134 88.8
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 4.5e-60 234.6 133 88.0
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 1.0e-59 233.4 129 89.1
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 2.2e-59 232.3 133 86.5
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 3.8e-59 231.5 130 87.7
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 3.8e-59 231.5 130 87.7
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.5e-58 228.8 133 86.5
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 2.5e-58 228.8 132 86.4
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 3.2e-58 228.4 132 86.4
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.2e-57 226.5 129 86.8
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.0e-56 221.9 124 85.5
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.1e-55 219.9 130 80.0
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 9.7e-55 216.9 119 89.9
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-54 216.5 123 84.6
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 2.2e-54 215.7 134 82.8
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 8.2e-54 213.8 119 89.1
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 8.2e-54 213.8 119 89.1
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 8.2e-54 213.8 124 86.3
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 1.4e-53 213.0 133 80.5
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 2.4e-53 212.2 133 80.5
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 1.3e-51 206.5 145 75.2
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 5.5e-50 201.1 119 83.2
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 7.2e-50 200.7 128 78.9
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 3.9e-48 194.9 107 89.7
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 6.7e-48 194.1 116 84.5
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 2.6e-47 192.2 103 92.2
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 3.3e-47 191.8 107 88.8
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.7e-47 191.0 133 73.7
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 6.3e-46 187.6 109 87.2
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 6.3e-46 187.6 109 87.2
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 8.2e-46 187.2 103 90.3
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 1.8e-45 186.0 133 75.2
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 2.4e-45 185.7 110 84.5
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 5.3e-45 184.5 119 80.7
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 7.0e-45 184.1 107 86.0
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.5e-44 183.0 119 77.3
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 3.5e-44 181.8 103 88.3
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.9e-44 181.0 107 83.2
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 3.8e-43 178.3 98 91.8
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.0e-43 177.9 107 82.2
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.9e-42 176.0 107 83.2
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 5.5e-42 174.5 102 86.3
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 5.5e-42 174.5 107 82.2
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 6.1e-41 171.0 100 83.0
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 6.1e-41 171.0 100 83.0
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 6.7e-40 167.5 100 82.0
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 6.7e-40 167.5 100 82.0
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 6.7e-40 167.5 100 82.0
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 2.2e-38 162.5 133 65.4
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 2.8e-38 162.2 108 75.9
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 6.3e-38 161.0 91 87.9
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-38 160.6 91 86.8
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.1e-37 160.2 91 86.8
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 2.4e-37 159.1 91 85.7
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 4.1e-37 158.3 96 80.2
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 5.3e-37 157.9 89 87.6
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 3.8e-35 151.8 82 89.0
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.5e-35 150.6 91 84.6
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 2.5e-34 149.1 93 84.9
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 4.2e-34 148.3 81 87.7
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 4.2e-34 148.3 81 87.7
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 4.2e-34 148.3 81 87.7
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 4.2e-34 148.3 81 87.7
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 4.2e-34 148.3 81 87.7
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 8.0e-33 144.1 80 88.8
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 1.0e-32 143.7 86 81.4
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.4e-32 143.3 92 80.4
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 2.3e-32 142.5 78 87.2
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 3.0e-32 142.1 81 84.0
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 3.4e-31 138.7 90 75.6
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.7e-30 135.2 81 79.0
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 4.8e-30 134.8 66 95.5
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 4.8e-30 134.8 66 95.5
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 7.0e-29 131.0 85 81.2
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.6e-28 129.8 77 83.1
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 7.7e-28 127.5 81 81.5
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 1.0e-27 127.1 93 72.0
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 2.2e-27 125.9 97 71.1
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 2.9e-27 125.6 77 80.5
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 2.5e-26 122.5 82 76.8
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 9.4e-26 120.6 89 70.8
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 9.4e-26 120.6 56 94.6
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 1.0e-24 117.1 126 55.6
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.0e-24 115.2 72 80.6
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 4.0e-24 115.2 123 54.5
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 5.2e-24 114.8 66 89.4
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 5.2e-24 114.8 81 76.5
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-23 113.2 65 89.2
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-23 113.2 65 89.2
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 2.0e-23 112.8 74 79.7
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 2.6e-23 112.5 120 51.7
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 5.7e-23 111.3 59 83.1
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 2.2e-22 109.4 68 85.3
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 3.7e-22 108.6 64 87.5
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 3.7e-22 108.6 74 77.0
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 4.8e-22 108.2 57 93.0
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 1.4e-21 106.7 74 75.7
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 4.1e-21 105.1 74 75.7
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 3.5e-20 102.1 75 74.7
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 5.9e-20 101.3 124 51.6
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 1.9e-18 96.3 44 93.2
Sabra08G0089800 Salix brachista HOM05D000963 ORTHO05D004715 3.3e-18 95.5 93 60.2
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 4.2e-18 95.1 48 87.5
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 7.2e-18 94.4 42 95.2
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 1.2e-17 93.6 63 76.2
BolSC43t60811H Brassica oleracea HOM05D000963 ORTHO05D004715 6.1e-17 91.3 46 93.5
DCAR_017253 Daucus carota HOM05D000963 ORTHO05D004715 6.1e-17 91.3 59 79.7
Gohir.A01G139250 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.8e-16 89.7 46 91.3
Oeu054713.1 Olea europaea HOM05D000963 ORTHO05D004715 3.0e-16 89.0 48 89.6
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 6.8e-16 87.8 63 71.4
BraSC179t45779Z Brassica rapa HOM05D000963 ORTHO05D004715 1.5e-15 86.7 44 93.2
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 2.0e-15 86.3 42 90.5
TPR.G27622 Trifolium pratense HOM05D000963 ORTHO05D004715 2.6e-15 85.9 46 84.8
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 1.1e-13 80.5 47 80.9
Lj4g0000207 Lotus japonicus HOM05D000963 ORTHO05D004715 3.2e-13 79.0 41 90.2
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 5.4e-13 78.2 46 89.1
FAN06G2610 Fragaria x ananassa HOM05D000963 ORTHO05D004715 7.0e-13 77.8 62 66.1
Oeu033793.1 Olea europaea HOM05D001982 ORTHO05D003938 3.5e-12 75.5 55 76.4
arahy.Tifrunner.gnm1.ann1.HN8ZWX Arachis hypogaea HOM05D000963 ORTHO05D004715 4.5e-12 75.1 41 85.4
Thecc.09G087300 Theobroma cacao HOM05D000963 ORTHO05D004715 5.9e-12 74.7 43 86.0
Psat5g119040 Pisum sativum HOM05D000963 ORTHO05D004715 6.6e-11 71.2 85 50.6
Gorai.002G200300 Gossypium raimondii HOM05D000963 ORTHO05D004715 8.0e-09 64.3 35 82.9
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.1e-08 62.4 41 75.6
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 3.1e-08 62.4 41 75.6
Sc21g0003630 Simmondsia chinensis HOM05D000556 ORTHO05D000404 3.4e-07 58.9 43 69.8


User provided reference genes

Program Settings