Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 5.0e-40 167.5 98 100.0
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.2e-35 150.2 95 88.4
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.1e-34 148.3 73 94.5
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 9.4e-23 110.2 63 81.0
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 4.7e-22 107.8 73 68.5
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.8e-21 105.9 73 71.2
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 6.7e-21 104.0 62 74.2
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.6e-20 102.1 67 71.6
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 8.2e-19 97.1 73 65.8
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.4e-18 96.3 65 67.7
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.1e-18 94.7 70 64.3
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 2.6e-17 92.0 64 70.3
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.7e-16 89.4 65 66.2
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 2.9e-16 88.6 67 61.2
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 3.8e-16 88.2 67 65.7
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 5.0e-16 87.8 67 62.7
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 5.0e-16 87.8 67 62.7
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 8.5e-16 87.0 64 67.2
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.1e-15 86.7 67 58.2
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 1.1e-15 86.7 67 59.7
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.5e-15 86.3 67 62.7
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 2.5e-15 85.5 63 68.3
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 3.2e-15 85.1 67 59.7
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 7.2e-15 84.0 67 59.7
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 7.2e-15 84.0 73 58.9
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 1.2e-14 83.2 70 58.6
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 1.2e-14 83.2 60 70.0
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.1e-14 82.4 66 60.6
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 4.7e-14 81.3 65 60.0
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 8.0e-14 80.5 73 56.2
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 8.0e-14 80.5 60 61.7
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 1.8e-13 79.3 60 60.0
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 2.3e-13 79.0 60 58.3
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 2.3e-13 79.0 51 76.5
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.2e-13 77.8 67 59.7
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.2e-13 77.8 67 59.7
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 5.2e-13 77.8 64 57.8
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 6.8e-13 77.4 60 58.3
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 8.8e-13 77.0 59 57.6
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 1.2e-12 76.6 60 65.0
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 1.5e-12 76.3 67 56.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 2.0e-12 75.9 64 56.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.6e-12 75.5 67 58.2
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 4.4e-12 74.7 53 69.8
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 5.7e-12 74.3 73 47.9
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.7e-11 72.8 64 53.1
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 2.2e-11 72.4 60 61.7
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.2e-11 72.4 60 61.7
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.2e-11 72.4 65 50.8
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.2e-11 72.4 65 50.8
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.8e-11 72.0 72 51.4
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 4.8e-11 71.2 69 49.3
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 8.3e-11 70.5 66 54.5
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.3e-11 70.5 65 50.8
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 8.3e-11 70.5 65 55.4
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 1.1e-10 70.1 60 60.0
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.1e-10 70.1 56 60.7
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.4e-10 69.7 61 55.7
Peaxi162Scf00003g04814 Petunia axillaris HOM05D004137 ORTHO05D004804 1.8e-10 69.3 35 94.3
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.8e-10 69.3 73 52.1
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 3.1e-10 68.6 65 52.3
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 4.1e-10 68.2 56 57.1
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.1e-10 68.2 75 48.0
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.1e-10 68.2 65 50.8
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 5.4e-10 67.8 67 49.3
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 5.4e-10 67.8 65 50.8
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 7.0e-10 67.4 67 47.8
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.1e-10 67.0 60 51.7
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.6e-09 66.2 65 49.2
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 2.0e-09 65.9 60 48.3
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 2.7e-09 65.5 62 54.8
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 3.5e-09 65.1 66 50.0
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.0e-08 63.5 68 47.1
Lj1g0005734 Lotus japonicus HOM05D004137 ORTHO05D004804 1.7e-08 62.8 46 65.2
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.7e-08 62.8 67 53.7
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 1.7e-08 62.8 60 56.7
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.2e-08 62.4 74 48.6
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.9e-08 62.0 66 45.5
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 3.8e-08 61.6 69 42.0
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 5.0e-08 61.2 65 46.2
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 6.5e-08 60.8 59 49.2
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 6.5e-08 60.8 59 49.2
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 6.5e-08 60.8 65 47.7
VMungo1383G3601 Vigna mungo HOM05D001721 ORTHO05D001804 8.5e-08 60.5 48 62.5
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-07 60.1 59 49.2
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-07 60.1 59 49.2
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-07 60.1 59 49.2
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 1.1e-07 60.1 59 49.2
Phvul.001G111100 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 1.5e-07 59.7 48 60.4
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.5e-07 59.7 65 46.2
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.9e-07 59.3 65 50.8
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.5e-07 58.9 69 43.5
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 3.2e-07 58.5 59 49.2
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 3.2e-07 58.5 62 51.6
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 3.2e-07 58.5 71 47.9
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 3.2e-07 58.5 67 43.3
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 5.5e-07 57.8 69 42.0
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 5.5e-07 57.8 69 43.5
Glyma.19G112300 Glycine max HOM05D004137 ORTHO05D004804 5.5e-07 57.8 48 58.3
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 5.5e-07 57.8 67 44.8
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 9.4e-07 57.0 75 44.0
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.4e-07 57.0 69 42.0
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.2e-06 56.6 64 46.9
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 1.2e-06 56.6 64 50.0
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.6e-06 56.2 67 43.3
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 2.1e-06 55.8 69 40.6
SHI14661 Sapria himalayana HOM05D004137 ORTHO05D004804 2.1e-06 55.8 39 61.5
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.7e-06 55.5 64 50.0
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.7e-06 55.5 64 46.9
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 3.6e-06 55.1 69 40.6
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.6e-06 55.1 65 47.7
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 4.7e-06 54.7 69 40.6
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 4.7e-06 54.7 69 40.6
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 4.7e-06 54.7 69 40.6
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 4.7e-06 54.7 65 44.6
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 6.1e-06 54.3 64 43.8
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 8.0e-06 53.9 64 45.3
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 8.0e-06 53.9 69 40.6
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 8.0e-06 53.9 64 45.3
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 8.0e-06 53.9 64 43.8


User provided reference genes

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