Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 4.5e-104 381.3 200 100.0
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.1e-89 333.6 193 90.7
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.1e-89 333.6 193 90.7
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.1e-89 333.6 193 90.7
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.8e-81 306.2 194 84.0
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 1.2e-80 303.5 193 82.9
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 3.4e-80 302.0 193 81.9
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 7.7e-80 300.8 193 82.9
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 3.8e-79 298.5 195 80.0
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 5.0e-79 298.1 195 80.0
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 5.0e-79 298.1 195 79.0
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 8.5e-79 297.4 195 80.0
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.1e-78 297.0 195 78.5
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.9e-78 296.2 194 82.0
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 1.9e-78 296.2 193 82.4
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 3.2e-78 295.4 195 77.9
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 3.2e-78 295.4 195 77.9
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.2e-78 295.4 195 79.5
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 4.2e-78 295.0 195 78.5
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 7.2e-78 294.3 195 78.5
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 7.2e-78 294.3 195 79.5
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 9.4e-78 293.9 200 80.0
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.2e-77 293.5 196 78.1
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 1.6e-77 293.1 190 79.5
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 2.1e-77 292.7 195 77.9
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 3.6e-77 292.0 195 77.4
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 4.6e-77 291.6 194 78.4
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 6.1e-77 291.2 195 77.4
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 6.1e-77 291.2 193 81.9
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 6.1e-77 291.2 194 79.9
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 6.1e-77 291.2 194 79.9
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 6.1e-77 291.2 194 80.9
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 7.9e-77 290.8 194 80.9
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 1.4e-76 290.0 195 77.4
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.4e-76 290.0 195 76.9
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 1.4e-76 290.0 194 78.4
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 1.4e-76 290.0 196 78.6
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.3e-76 289.3 194 80.9
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 2.3e-76 289.3 194 79.4
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 2.3e-76 289.3 194 82.0
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 2.3e-76 289.3 193 79.3
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 2.3e-76 289.3 193 79.3
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.0e-76 288.9 201 79.6
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 3.9e-76 288.5 194 80.9
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 3.9e-76 288.5 194 80.9
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 3.9e-76 288.5 194 78.9
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 5.1e-76 288.1 194 80.9
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 6.7e-76 287.7 190 80.0
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 8.8e-76 287.3 194 78.9
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 1.5e-75 286.6 194 77.8
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.5e-75 286.6 195 76.4
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 1.5e-75 286.6 194 78.9
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 1.5e-75 286.6 194 78.9
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 2.0e-75 286.2 190 80.0
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.0e-75 286.2 196 80.6
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 2.6e-75 285.8 196 78.1
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 3.3e-75 285.4 196 80.6
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 4.4e-75 285.0 190 81.1
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 4.4e-75 285.0 194 80.9
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 7.4e-75 284.3 194 77.8
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 9.7e-75 283.9 202 77.2
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 9.7e-75 283.9 194 77.3
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.3e-74 283.5 197 77.2
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 1.7e-74 283.1 194 77.8
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 2.2e-74 282.7 190 80.5
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 2.2e-74 282.7 190 80.5
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 2.2e-74 282.7 190 80.5
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 3.7e-74 282.0 190 80.5
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 1.1e-73 280.4 190 79.5
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.4e-73 280.0 194 78.4
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 1.4e-73 280.0 190 80.0
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 1.4e-73 280.0 194 78.4
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 1.4e-73 280.0 190 79.5
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 1.8e-73 279.6 190 79.5
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 1.8e-73 279.6 193 79.3
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 2.4e-73 279.3 193 76.2
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 3.1e-73 278.9 193 76.7
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 4.1e-73 278.5 190 78.9
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 5.3e-73 278.1 192 80.2
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 1.5e-72 276.6 193 75.6
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 5.9e-72 274.6 193 77.7
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 1.3e-71 273.5 189 75.7
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 2.9e-71 272.3 193 74.6
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 3.8e-71 271.9 194 76.8
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 1.4e-70 270.0 190 75.3
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 1.9e-70 269.6 195 75.9
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 9.4e-70 267.3 194 75.3
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 1.6e-69 266.5 194 75.8
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 1.6e-69 266.5 194 75.8
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 2.1e-69 266.2 193 75.6
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 3.6e-69 265.4 180 77.8
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.1e-67 260.4 193 73.6
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 3.7e-66 255.4 194 72.7
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 3.7e-66 255.4 202 68.8
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 7.0e-65 251.1 194 71.6
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 7.0e-65 251.1 175 79.4
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 1.2e-64 250.4 184 75.0
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.0e-63 247.3 186 71.5
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 1.3e-63 246.9 186 70.4
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 1.5e-62 243.4 194 71.1
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 1.9e-62 243.0 184 69.0
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 9.4e-62 240.7 186 70.4
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 8.0e-61 237.7 191 66.5
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 8.8e-60 234.2 201 62.7
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 2.6e-59 232.6 186 66.7
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 2.6e-59 232.6 199 63.3
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 7.0e-57 224.6 209 59.3
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 7.7e-56 221.1 137 83.2
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 3.2e-54 215.7 137 81.8
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 4.2e-54 215.3 186 60.2
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 2.3e-52 209.5 194 64.4
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 6.8e-52 208.0 192 62.5
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 8.8e-52 207.6 137 80.3
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 2.5e-46 189.5 163 63.8
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.2e-45 187.2 192 59.4
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 6.3e-42 174.9 194 54.6
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 1.3e-39 167.2 115 77.4
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 8.6e-39 164.5 123 72.4
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 1.1e-38 164.1 102 78.4
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.5e-38 163.7 125 72.8
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 5.4e-33 145.2 168 46.4
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 6.8e-28 128.3 135 56.3
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 2.0e-27 126.7 93 71.0
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 4.9e-26 122.1 107 63.6
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 9.2e-25 117.9 89 68.5
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 1.9e-22 110.2 76 76.3
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 4.4e-19 99.0 157 35.7
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 1.9e-17 93.6 64 79.7
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 6.0e-16 88.6 66 72.7
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 1.0e-15 87.8 45 88.9
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 4.0e-12 75.9 162 30.9
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 6.4e-10 68.6 46 76.1
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 4.3e-06 55.8 52 63.5
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 5.6e-06 55.5 52 63.5


User provided reference genes

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