Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G954.13 Capsicum annuum HOM05D002080 ORTHO05D002062 1.8e-78 295.8 146 100.0
CAN.G689.15 Capsicum annuum HOM05D002080 ORTHO05D002062 2.3e-65 252.3 142 88.7
CAN.G33.8 Capsicum annuum HOM05D002080 ORTHO05D002062 7.4e-56 220.7 118 92.4
CAN.G62.21 Capsicum annuum HOM05D002080 ORTHO05D002062 5.6e-48 194.5 100 93.0
Nitab4.5_0001157g0060 Nicotiana tabacum HOM05D002080 ORTHO05D002062 2.0e-21 106.3 90 61.1
PGSC0003DMG400032260 Solanum tuberosum HOM05D002080 ORTHO05D002062 3.8e-20 102.1 92 57.6
Nitab4.5_0007479g0010 Nicotiana tabacum HOM05D002080 ORTHO05D002062 1.4e-19 100.1 91 58.2
Solyc09g082290.3 Solanum lycopersicum HOM05D002080 ORTHO05D002062 1.2e-18 97.1 92 55.4
CAN.G1094.23 Capsicum annuum HOM05D002080 ORTHO05D002062 3.6e-18 95.5 65 69.2
Peaxi162Scf00092g00338 Petunia axillaris HOM05D002080 ORTHO05D002062 7.4e-16 87.8 89 50.6
Peaxi162Scf00402g00513 Petunia axillaris HOM05D002080 ORTHO05D002062 1.7e-12 76.6 80 46.2
Manes.03G176300 Manihot esculenta HOM05D002080 ORTHO05D002062 6.1e-10 68.2 80 45.0
CANSAT78G0377 Cannabis sativa HOM05D002080 ORTHO05D002062 8.0e-10 67.8 79 44.3
COL.COLO4_21514 Corchorus olitorius HOM05D002080 ORTHO05D002062 1.0e-09 67.4 52 55.8
Ah.07g204240 Amaranthus hybridus HOM05D002080 ORTHO05D002062 2.3e-09 66.2 56 48.2
CANSAT25G3902 Cannabis sativa HOM05D002080 ORTHO05D002062 4.0e-09 65.5 83 43.4
Lj6A602T59 Lonicera japonica HOM05D002080 ORTHO05D002062 4.0e-09 65.5 69 44.9
Lj6A605T87 Lonicera japonica HOM05D002080 ORTHO05D002062 4.0e-09 65.5 69 44.9
SalBow6G2515 Salvia bowleyana HOM05D002080 ORTHO05D002062 5.2e-09 65.1 75 41.3
MSTRG.9969 Avicennia marina HOM05D002080 ORTHO05D002062 6.7e-09 64.7 68 48.5
EL10Ac3g06481 Beta vulgaris HOM05D002080 ORTHO05D002062 6.7e-09 64.7 68 47.1
AUR62033664 Chenopodium quinoa HOM05D002080 ORTHO05D002062 1.2e-08 63.9 68 42.6
Migut.G00357 Erythranthe guttata HOM05D002080 ORTHO05D002062 1.2e-08 63.9 53 52.8
VMungo1215G1901 Vigna mungo HOM05D002080 ORTHO05D002062 1.2e-08 63.9 53 50.9
AUR62034721 Chenopodium quinoa HOM05D002080 ORTHO05D002062 1.5e-08 63.5 68 42.6
Eucgr.B01055 Eucalyptus grandis HOM05D002080 ORTHO05D002062 1.5e-08 63.5 52 53.8
Cpa.g.sc58.81 Carica papaya HOM05D002080 ORTHO05D002062 2.0e-08 63.2 55 45.5
Gohir.A02G033100 Gossypium hirsutum HOM05D002080 ORTHO05D002062 2.0e-08 63.2 58 46.6
Gorai.005G043900 Gossypium raimondii HOM05D002080 ORTHO05D002062 2.0e-08 63.2 58 46.6
Nitab4.5_0012606g0020 Nicotiana tabacum HOM05D002080 ORTHO05D002062 2.0e-08 63.2 73 42.5
TWI73G0640 Tripterygium wilfordii HOM05D002080 ORTHO05D002062 2.0e-08 63.2 52 50.0
MSTRG.4043 Avicennia marina HOM05D002080 ORTHO05D002062 2.6e-08 62.8 81 42.0
CiPaw.02G123000 Carya illinoinensis HOM05D002080 ORTHO05D002062 3.3e-08 62.4 52 48.1
Dinv32908 Davidia involucrata HOM05D002080 ORTHO05D002062 3.3e-08 62.4 73 45.2
Haze_11199 Corylus avellana HOM05D002080 ORTHO05D002062 4.4e-08 62.0 68 44.1
Manes.15G030600 Manihot esculenta HOM05D002080 ORTHO05D002062 4.4e-08 62.0 68 44.1
Phvul.007G058600 Phaseolus vulgaris HOM05D002080 ORTHO05D002062 4.4e-08 62.0 53 50.9
GSVIVG01018010001 Vitis vinifera HOM05D002080 ORTHO05D002062 4.4e-08 62.0 61 47.5
Glyma.01G235000 Glycine max HOM05D002080 ORTHO05D002062 5.7e-08 61.6 55 50.9
Prupe.1G017000 Prunus persica HOM05D002080 ORTHO05D002062 5.7e-08 61.6 64 46.9
Thecc.04G234900 Theobroma cacao HOM05D002080 ORTHO05D002062 5.7e-08 61.6 52 48.1
Gohir.D02G039600 Gossypium hirsutum HOM05D002080 ORTHO05D002062 7.5e-08 61.2 58 44.8
Lj6C605T16 Lonicera japonica HOM05D002080 ORTHO05D002062 7.5e-08 61.2 72 37.5
Potri.002G050200 Populus trichocarpa HOM05D002080 ORTHO05D002062 7.5e-08 61.2 70 42.9
CSS0001547 Camellia sinensis var. sinensis HOM05D002080 ORTHO05D002062 9.7e-08 60.8 69 40.6
FAN27G3240 Fragaria x ananassa HOM05D002080 ORTHO05D002062 9.7e-08 60.8 52 46.2
Glyma.10G246800 Glycine max HOM05D002080 ORTHO05D002062 9.7e-08 60.8 53 50.9
HanXRQChr09g0247381 Helianthus annuus HOM05D002080 ORTHO05D002062 9.7e-08 60.8 53 52.8
Phvul.002G042500 Phaseolus vulgaris HOM05D002080 ORTHO05D002062 9.7e-08 60.8 65 44.6
TWI09G1378 Tripterygium wilfordii HOM05D002080 ORTHO05D002062 9.7e-08 60.8 69 42.0
Lj6A602T57 Lonicera japonica HOM05D002080 ORTHO05D002062 1.3e-07 60.5 72 37.5
Solyc03g005210.4 Solanum lycopersicum HOM05D002080 ORTHO05D002062 1.3e-07 60.5 102 34.3
VMungo0720G0541 Vigna mungo HOM05D002080 ORTHO05D002062 1.3e-07 60.5 53 52.8
Actinidia40134 Actinidia chinensis HOM05D002080 ORTHO05D002062 1.7e-07 60.1 53 43.4
CSS0017769 Camellia sinensis var. sinensis HOM05D002080 ORTHO05D002062 1.7e-07 60.1 53 47.2
Cfa008474 Carpinus fangiana HOM05D002080 ORTHO05D002062 1.7e-07 60.1 68 42.6
Ca_10868_v3 Cicer arietinum L. HOM05D002080 ORTHO05D002062 1.7e-07 60.1 53 50.9
ClCG05G005050 Citrullus lanatus HOM05D002080 ORTHO05D002062 1.7e-07 60.1 77 45.5
Dinv34777 Davidia involucrata HOM05D002080 ORTHO05D002062 1.7e-07 60.1 56 46.4
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 2.2e-07 59.7 80 38.8
Sed0012217 Sechium edule HOM05D002080 ORTHO05D002062 2.2e-07 59.7 52 46.2
Hund10645 Selenicereus undatus HOM05D002080 ORTHO05D002062 2.2e-07 59.7 68 41.2
SGA_v2.0_scaffold81G26034 Striga asiatica HOM05D002080 ORTHO05D002062 2.2e-07 59.7 74 39.2
Aqoxy5G00440 Aquilegia oxysepala HOM05D002080 ORTHO05D002062 2.8e-07 59.3 81 40.7
FAN15G2403 Fragaria x ananassa HOM05D002080 ORTHO05D002062 2.8e-07 59.3 52 44.2
Oeu053322.1 Olea europaea HOM05D002080 ORTHO05D002062 2.8e-07 59.3 52 48.1
Oeu053323.1 Olea europaea HOM05D002080 ORTHO05D002062 2.8e-07 59.3 52 48.1
QL06p001734 Quercus lobata HOM05D002080 ORTHO05D002062 2.8e-07 59.3 52 46.2
CsaV3_3G013110 Cucumis sativus L. HOM05D002080 ORTHO05D002062 3.7e-07 58.9 85 41.2
Migut.N02036 Erythranthe guttata HOM05D002080 ORTHO05D002062 3.7e-07 58.9 54 42.6
QL12p020987 Quercus lobata HOM05D002080 ORTHO05D002062 3.7e-07 58.9 63 42.9
THA.LOC104816089 Tarenaya hassleriana HOM05D002080 ORTHO05D002062 3.7e-07 58.9 60 45.0
CSS0036257 Camellia sinensis var. sinensis HOM05D002080 ORTHO05D002062 4.8e-07 58.5 69 39.1
Migut.O00477 Erythranthe guttata HOM05D002080 ORTHO05D002062 4.8e-07 58.5 54 42.6
Hma1.2p1_1572F.1_g291420 Hydrangea macrophylla HOM05D002080 ORTHO05D002062 4.8e-07 58.5 53 43.4
Hma1.2p1_1572F.1_g291430 Hydrangea macrophylla HOM05D002080 ORTHO05D002062 4.8e-07 58.5 53 43.4
Hma1.2p1_2201F.1_g317038 Hydrangea macrophylla HOM05D002080 ORTHO05D002062 4.8e-07 58.5 53 43.4
Lalb_Chr02g0140651 Lupinus albus HOM05D002080 ORTHO05D002062 4.8e-07 58.5 64 43.8
Sabra05G0162100 Salix brachista HOM05D002080 ORTHO05D002062 4.8e-07 58.5 68 38.2
CiPaw.07G089400 Carya illinoinensis HOM05D002080 ORTHO05D002062 6.3e-07 58.2 63 42.9
MELO3C006518.2 Cucumis melo HOM05D002080 ORTHO05D002062 6.3e-07 58.2 77 42.9
Medtr5g006940 Medicago truncatula HOM05D002080 ORTHO05D002062 6.3e-07 58.2 54 48.1
PGR129G0006 Punica granatum HOM05D002080 ORTHO05D002062 6.3e-07 58.2 54 48.1
PGR142G1155 Punica granatum HOM05D002080 ORTHO05D002062 6.3e-07 58.2 54 48.1
MD03G1261400 Malus domestica HOM05D002080 ORTHO05D002062 1.1e-06 57.4 63 39.7
Potri.005G212000 Populus trichocarpa HOM05D002080 ORTHO05D002062 1.1e-06 57.4 68 38.2
TPR.G40685 Trifolium pratense HOM05D002080 ORTHO05D002062 1.1e-06 57.4 53 49.1
Medtr1g103420 Medicago truncatula HOM05D002080 ORTHO05D002062 1.4e-06 57.0 53 49.1
Sed0000687 Sechium edule HOM05D002080 ORTHO05D002062 1.4e-06 57.0 77 42.9
SGA_v2.0_scaffold191G40495 Striga asiatica HOM05D002080 ORTHO05D002062 1.4e-06 57.0 73 37.0
TAR365G0049 Trochodendron aralioides HOM05D002080 ORTHO05D002062 1.4e-06 57.0 52 46.2
arahy.Tifrunner.gnm1.ann1.I575JI Arachis hypogaea HOM05D002080 ORTHO05D002062 1.8e-06 56.6 53 49.1
HanXRQChr09g0247391 Helianthus annuus HOM05D002080 ORTHO05D002062 1.8e-06 56.6 53 49.1
arahy.Tifrunner.gnm1.ann1.38W5QX Arachis hypogaea HOM05D002080 ORTHO05D002062 2.4e-06 56.2 52 44.2
arahy.Tifrunner.gnm1.ann1.L2LZ1T Arachis hypogaea HOM05D002080 ORTHO05D002062 2.4e-06 56.2 52 44.2
arahy.Tifrunner.gnm1.ann1.PB298V Arachis hypogaea HOM05D002080 ORTHO05D002062 2.4e-06 56.2 52 44.2
DCAR_024173 Daucus carota HOM05D002080 ORTHO05D002062 2.4e-06 56.2 68 39.7
Duzib133G0739 Durio zibethinus HOM05D002080 ORTHO05D002062 2.4e-06 56.2 52 42.3
MD11G1281900 Malus domestica HOM05D002080 ORTHO05D002062 2.4e-06 56.2 63 39.7
MD11G1282200 Malus domestica HOM05D002080 ORTHO05D002062 2.4e-06 56.2 63 39.7
PGSC0003DMG400016267 Solanum tuberosum HOM05D002080 ORTHO05D002062 2.4e-06 56.2 67 37.3
Aa31LG8G9140 Aethionema arabicum HOM05D002080 ORTHO05D002062 3.1e-06 55.8 64 40.6
A04p35230 Brassica napus HOM05D002080 ORTHO05D002062 3.1e-06 55.8 72 36.1
BraA04t18956Z Brassica rapa HOM05D002080 ORTHO05D002062 3.1e-06 55.8 72 36.1
CsaV3_7G022400 Cucumis sativus L. HOM05D002080 ORTHO05D002062 3.1e-06 55.8 63 36.5
FvH4_2g23210 Fragaria vesca HOM05D002080 ORTHO05D002062 3.1e-06 55.8 52 40.4
FAN22G1469 Fragaria x ananassa HOM05D002080 ORTHO05D002062 3.1e-06 55.8 52 46.2
FAN24G0687 Fragaria x ananassa HOM05D002080 ORTHO05D002062 3.1e-06 55.8 52 40.4
Lsat_1_v5_gn_7_68660 Lactuca sativa HOM05D002080 ORTHO05D002062 3.1e-06 55.8 53 45.3
SalBow2G1818 Salvia bowleyana HOM05D002080 ORTHO05D002062 3.1e-06 55.8 52 44.2
Solyc09g065440.4 Solanum lycopersicum HOM05D002080 ORTHO05D002062 3.1e-06 55.8 67 40.3
Atru.chr4.2434 Acer truncatum HOM05D002080 ORTHO05D002062 4.1e-06 55.5 52 46.2
AL3G36910 Arabidopsis lyrata HOM05D002080 ORTHO05D002062 4.1e-06 55.5 48 45.8
MSTRG.17456 Avicennia marina HOM05D002080 ORTHO05D002062 4.1e-06 55.5 70 34.3
CAN.G638.93 Capsicum annuum HOM05D002080 ORTHO05D002062 4.1e-06 55.5 57 43.9
ClCG06G006320 Citrullus lanatus HOM05D002080 ORTHO05D002062 4.1e-06 55.5 49 42.9
ECA240G3849 Erigeron canadensis HOM05D002080 ORTHO05D002062 4.1e-06 55.5 53 45.3
Lsat_1_v5_gn_2_11060 Lactuca sativa HOM05D002080 ORTHO05D002062 4.1e-06 55.5 53 45.3
Lj5g0014009 Lotus japonicus HOM05D002080 ORTHO05D002062 4.1e-06 55.5 70 40.0
SGA_v2.0_scaffold1G00505 Striga asiatica HOM05D002080 ORTHO05D002062 4.1e-06 55.5 52 42.3
TPR.G5539 Trifolium pratense HOM05D002080 ORTHO05D002062 4.1e-06 55.5 62 45.2
arahy.Tifrunner.gnm1.ann1.BK36SG Arachis hypogaea HOM05D002080 ORTHO05D002062 5.3e-06 55.1 53 47.2
A05p26060 Brassica napus HOM05D002080 ORTHO05D002062 5.3e-06 55.1 81 34.6
Carub.0003s2276 Capsella rubella HOM05D002080 ORTHO05D002062 5.3e-06 55.1 48 45.8
Nn6g34118 Nelumbo nucifera HOM05D002080 ORTHO05D002062 5.3e-06 55.1 55 41.8
Nitab4.5_0002109g0010 Nicotiana tabacum HOM05D002080 ORTHO05D002062 5.3e-06 55.1 83 33.7
PSO210G4618 Papaver somniferum HOM05D002080 ORTHO05D002062 5.3e-06 55.1 52 42.3
Sopen06g019200 Solanum pennellii HOM05D002080 ORTHO05D002062 5.3e-06 55.1 52 42.3
Ca_24422_v3 Cicer arietinum L. HOM05D002080 ORTHO05D002062 7.0e-06 54.7 53 43.4
Ciclev10006770m.g Citrus clementina HOM05D002080 ORTHO05D002062 7.0e-06 54.7 52 42.3
Cc01_g19230 Coffea canephora HOM05D002080 ORTHO05D002062 7.0e-06 54.7 75 37.3
Duzib151G0502 Durio zibethinus HOM05D002080 ORTHO05D002062 7.0e-06 54.7 50 42.0
PSO832G0902 Papaver somniferum HOM05D002080 ORTHO05D002062 7.0e-06 54.7 52 42.3
FvH4_4g16090 Fragaria vesca HOM05D002080 ORTHO05D002062 9.1e-06 54.3 68 39.7
FAN12G0521 Fragaria x ananassa HOM05D002080 ORTHO05D002062 9.1e-06 54.3 68 39.7
Nitab4.5_0000252g0010 Nicotiana tabacum HOM05D002080 ORTHO05D002062 9.1e-06 54.3 72 37.5
Psat2g189960 Pisum sativum HOM05D002080 ORTHO05D002062 9.1e-06 54.3 62 41.9
Solyc06g054030.2 Solanum lycopersicum HOM05D002080 ORTHO05D002062 9.1e-06 54.3 52 40.4


User provided reference genes

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