Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G947.6 Capsicum annuum HOM05D000521 ORTHO05D000384 9.4e-56 219.9 109 100.0
CAN.G397.47 Capsicum annuum HOM05D000521 ORTHO05D000384 1.6e-42 176.0 107 83.2
PGSC0003DMG400008882 Solanum tuberosum HOM05D000521 ORTHO05D000384 1.1e-24 116.7 131 53.4
Solyc09g009770.3 Solanum lycopersicum HOM05D000521 ORTHO05D000384 1.9e-24 115.9 131 53.4
Sopen09g004530 Solanum pennellii HOM05D000521 ORTHO05D000384 1.9e-24 115.9 131 53.4
Nitab4.5_0000794g0140 Nicotiana tabacum HOM05D000521 ORTHO05D000384 5.2e-22 107.8 131 51.9
Peaxi162Scf00752g00410 Petunia axillaris HOM05D000521 ORTHO05D000384 2.0e-18 95.9 96 58.3
Dinv31660 Davidia involucrata HOM05D000521 ORTHO05D000384 5.0e-09 64.7 118 37.3
Lj3C929T10 Lonicera japonica HOM05D000521 ORTHO05D000384 3.3e-08 62.0 42 69.0
Cc06_g05510 Coffea canephora HOM05D000521 ORTHO05D000384 9.5e-08 60.5 83 44.6
Actinidia05445 Actinidia chinensis HOM05D000521 ORTHO05D000384 1.2e-07 60.1 112 40.2
Cc02_g09900 Coffea canephora HOM05D000521 ORTHO05D000384 1.2e-07 60.1 44 65.9
Gohir.D01G128300 Gossypium hirsutum HOM05D000521 ORTHO05D000384 1.6e-07 59.7 38 73.7
Gorai.002G158900 Gossypium raimondii HOM05D000521 ORTHO05D000384 1.6e-07 59.7 38 73.7
CSS0004239 Camellia sinensis var. sinensis HOM05D000521 ORTHO05D000384 2.1e-07 59.3 46 65.2
CSS0028468 Camellia sinensis var. sinensis HOM05D000521 ORTHO05D000384 2.1e-07 59.3 46 65.2
Gohir.A01G138600 Gossypium hirsutum HOM05D000521 ORTHO05D000384 2.8e-07 58.9 39 69.2
Nn6g34988 Nelumbo nucifera HOM05D000521 ORTHO05D000384 2.8e-07 58.9 61 49.2
Thecc.05G085100 Theobroma cacao HOM05D000521 ORTHO05D000384 3.6e-07 58.5 43 62.8
ATR0820G046 Amborella trichopoda HOM05D000521 ORTHO05D000384 4.7e-07 58.2 40 72.5
SalBow3G1935 Salvia bowleyana HOM05D000521 ORTHO05D000384 4.7e-07 58.2 31 87.1
vmacro07390 Vaccinium macrocarpon HOM05D000521 ORTHO05D000384 4.7e-07 58.2 34 79.4
Nn2g14074 Nelumbo nucifera HOM05D000521 ORTHO05D000384 6.2e-07 57.8 56 55.4
Cfa016570 Carpinus fangiana HOM05D000521 ORTHO05D000384 8.0e-07 57.4 37 73.0
Os12g0149900 Oryza sativa ssp. japonica HOM05D000521 ORTHO05D000384 8.0e-07 57.4 47 61.7
PGR004G1655 Punica granatum HOM05D000521 ORTHO05D000384 8.0e-07 57.4 111 40.5
Sabra06G0089600 Salix brachista HOM05D000521 ORTHO05D000384 8.0e-07 57.4 79 39.2
Zm00001eb196930 Zea mays HOM05D000521 ORTHO05D000384 8.0e-07 57.4 45 64.4
COL.COLO4_29785 Corchorus olitorius HOM05D000521 ORTHO05D000384 1.1e-06 57.0 33 81.8
MELO3C009454.2 Cucumis melo HOM05D000521 ORTHO05D000384 1.1e-06 57.0 85 43.5
Nitab4.5_0005756g0040 Nicotiana tabacum HOM05D000521 ORTHO05D000384 1.1e-06 57.0 42 71.4
Nitab4.5_0011780g0010 Nicotiana tabacum HOM05D000521 ORTHO05D000384 1.1e-06 57.0 42 71.4
Sopen10g035020 Solanum pennellii HOM05D000521 ORTHO05D000384 1.1e-06 57.0 47 61.7
Aa31LG10G7860 Aethionema arabicum HOM05D000521 ORTHO05D000384 1.4e-06 56.6 54 53.7
Duzib106G0760 Durio zibethinus HOM05D000521 ORTHO05D000384 1.4e-06 56.6 65 49.2
Glyma.13G152168 Glycine max HOM05D000521 ORTHO05D000384 1.4e-06 56.6 32 84.4
Rhsim03G0078200 Rhododendron simsii HOM05D000521 ORTHO05D000384 1.4e-06 56.6 58 56.9
RcHm_v2.0_Chr3g0472641 Rosa chinensis HOM05D000521 ORTHO05D000384 1.4e-06 56.6 46 58.7
FvH4_6g18220 Fragaria vesca HOM05D000521 ORTHO05D000384 1.8e-06 56.2 49 59.2
FAN02G0272 Fragaria x ananassa HOM05D000521 ORTHO05D000384 1.8e-06 56.2 49 59.2
FAN05G3829 Fragaria x ananassa HOM05D000521 ORTHO05D000384 1.8e-06 56.2 49 59.2
FAN14G1947 Fragaria x ananassa HOM05D000521 ORTHO05D000384 1.8e-06 56.2 49 59.2
Peaxi162Scf00146g00716 Petunia axillaris HOM05D000521 ORTHO05D000384 1.8e-06 56.2 41 70.7
Phvul.007G230100 Phaseolus vulgaris HOM05D000521 ORTHO05D000384 1.8e-06 56.2 61 54.1
ClCG10G019170 Citrullus lanatus HOM05D000521 ORTHO05D000384 2.3e-06 55.8 82 46.3
Duzib093G1158 Durio zibethinus HOM05D000521 ORTHO05D000384 2.3e-06 55.8 33 78.8
Nitab4.5_0000381g0250 Nicotiana tabacum HOM05D000521 ORTHO05D000384 2.3e-06 55.8 47 63.8
Oeu009898.1 Olea europaea HOM05D000521 ORTHO05D000384 2.3e-06 55.8 31 83.9
Aqoxy39s003 Aquilegia oxysepala HOM05D000521 ORTHO05D000384 3.1e-06 55.5 33 78.8
MSTRG.5822 Avicennia marina HOM05D000521 ORTHO05D000384 3.1e-06 55.5 109 38.5
MELO3C024529.2 Cucumis melo HOM05D000521 ORTHO05D000384 3.1e-06 55.5 80 43.8
CsaV3_6G040540 Cucumis sativus L. HOM05D000521 ORTHO05D000384 3.1e-06 55.5 80 43.8
Migut.F00901 Erythranthe guttata HOM05D000521 ORTHO05D000384 3.1e-06 55.5 46 60.9
Glyma.10G067900 Glycine max HOM05D000521 ORTHO05D000384 3.1e-06 55.5 96 41.7
Medtr1g060590 Medicago truncatula HOM05D000521 ORTHO05D000384 3.1e-06 55.5 109 39.4
HPP92_008646 Vanilla planifolia HOM05D000521 ORTHO05D000384 3.1e-06 55.5 51 51.0
CAN.G1099.14 Capsicum annuum HOM05D000521 ORTHO05D000384 4.0e-06 55.1 32 81.2
Migut.J00968 Erythranthe guttata HOM05D000521 ORTHO05D000384 4.0e-06 55.1 33 75.8
Manes.09G059000 Manihot esculenta HOM05D000521 ORTHO05D000384 4.0e-06 55.1 82 45.1
Nitab4.5_0012320g0010 Nicotiana tabacum HOM05D000521 ORTHO05D000384 4.0e-06 55.1 32 81.2
Psat6g080560 Pisum sativum HOM05D000521 ORTHO05D000384 4.0e-06 55.1 111 38.7
Potri.006G114700 Populus trichocarpa HOM05D000521 ORTHO05D000384 4.0e-06 55.1 106 36.8
Prupe.2G083500 Prunus persica HOM05D000521 ORTHO05D000384 4.0e-06 55.1 56 51.8
RhsimUnG0166600 Rhododendron simsii HOM05D000521 ORTHO05D000384 4.0e-06 55.1 44 61.4
Solyc10g085610.2 Solanum lycopersicum HOM05D000521 ORTHO05D000384 4.0e-06 55.1 32 81.2
CANSAT56G3496 Cannabis sativa HOM05D000521 ORTHO05D000384 5.2e-06 54.7 35 71.4
CsaV3_3G037080 Cucumis sativus L. HOM05D000521 ORTHO05D000384 5.2e-06 54.7 52 51.9
SGA_v2.0_scaffold75G24765 Striga asiatica HOM05D000521 ORTHO05D000384 5.2e-06 54.7 33 75.8
VMungo0720G1506 Vigna mungo HOM05D000521 ORTHO05D000384 5.2e-06 54.7 32 81.2
Duzib128G0204 Durio zibethinus HOM05D000521 ORTHO05D000384 6.8e-06 54.3 33 75.8
MBI01_g11649_MAGBIO Magnolia biondii HOM05D000521 ORTHO05D000384 6.8e-06 54.3 32 81.2
Manes.08G023400 Manihot esculenta HOM05D000521 ORTHO05D000384 6.8e-06 54.3 86 39.5
Oeu009897.1 Olea europaea HOM05D000521 ORTHO05D000384 6.8e-06 54.3 41 68.3
Sed0026628 Sechium edule HOM05D000521 ORTHO05D000384 6.8e-06 54.3 118 35.6
unitig_8.g4162 Utricularia gibba HOM05D000521 ORTHO05D000384 6.8e-06 54.3 37 62.2
HPP92_008770 Vanilla planifolia HOM05D000521 ORTHO05D000384 6.8e-06 54.3 46 56.5
Zm00001eb092720 Zea mays HOM05D000521 ORTHO05D000384 6.8e-06 54.3 43 65.1
arahy.Tifrunner.gnm1.ann1.IMZD91 Arachis hypogaea HOM05D000521 ORTHO05D000384 8.9e-06 53.9 32 81.2
arahy.Tifrunner.gnm1.ann1.X9L46I Arachis hypogaea HOM05D000521 ORTHO05D000384 8.9e-06 53.9 32 81.2
CiPaw.09G010600 Carya illinoinensis HOM05D000521 ORTHO05D000384 8.9e-06 53.9 38 68.4
Ca_11638_v3 Cicer arietinum L. HOM05D000521 ORTHO05D000384 8.9e-06 53.9 55 54.5
Haze_19568 Corylus avellana HOM05D000521 ORTHO05D000384 8.9e-06 53.9 36 72.2
Gohir.D11G340600 Gossypium hirsutum HOM05D000521 ORTHO05D000384 8.9e-06 53.9 44 63.6
Gorai.007G370500 Gossypium raimondii HOM05D000521 ORTHO05D000384 8.9e-06 53.9 44 63.6
Lj5C42T2 Lonicera japonica HOM05D000521 ORTHO05D000384 8.9e-06 53.9 63 47.6
Lj5C42T7 Lonicera japonica HOM05D000521 ORTHO05D000384 8.9e-06 53.9 63 47.6
Prupe.7G114500 Prunus persica HOM05D000521 ORTHO05D000384 8.9e-06 53.9 37 67.6
Solyc10g083360.2 Solanum lycopersicum HOM05D000521 ORTHO05D000384 8.9e-06 53.9 30 83.3
TPR.G35435 Trifolium pratense HOM05D000521 ORTHO05D000384 8.9e-06 53.9 63 47.6
unitig_578.g15760 Utricularia gibba HOM05D000521 ORTHO05D000384 8.9e-06 53.9 34 70.6


User provided reference genes

Program Settings