Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 6.8e-77 290.8 171 100.0
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-63 246.9 168 88.1
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.9e-63 246.1 166 86.7
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.8e-61 239.6 171 84.8
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.3e-61 239.2 174 84.5
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.0e-61 238.4 171 84.8
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.9e-59 231.5 171 83.0
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 8.3e-59 230.7 171 82.5
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 8.3e-59 230.7 171 82.5
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 4.1e-58 228.4 171 81.9
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.2e-54 216.9 170 75.3
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.1e-54 216.1 147 88.4
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 6.2e-54 214.5 170 74.7
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.3e-51 206.8 162 72.2
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.1e-50 203.8 171 73.1
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.4e-50 202.6 167 76.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 5.4e-50 201.4 164 75.6
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.2e-49 200.3 165 74.5
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.6e-49 199.9 160 75.0
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 3.5e-49 198.7 171 73.1
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 4.6e-49 198.4 165 75.8
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.3e-48 196.8 160 78.1
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.3e-48 196.1 165 75.8
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 3.0e-48 195.7 172 70.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 3.9e-48 195.3 166 74.1
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.9e-48 195.3 171 69.0
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 8.6e-48 194.1 161 75.2
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.5e-47 193.4 178 57.9
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.5e-47 193.4 160 73.8
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 1.9e-47 193.0 175 70.9
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.4e-45 186.8 177 56.5
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.8e-45 186.4 157 60.5
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 3.1e-45 185.7 177 55.9
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 4.0e-45 185.3 162 75.9
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.0e-44 183.0 171 56.1
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 2.0e-44 183.0 169 72.8
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 3.4e-44 182.2 171 70.8
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 5.8e-44 181.4 172 69.2
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 5.8e-44 181.4 160 69.4
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 7.6e-44 181.0 171 55.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.6e-44 181.0 171 55.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.6e-44 181.0 171 55.0
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.9e-43 179.1 168 73.2
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 6.4e-43 177.9 230 45.2
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 8.4e-43 177.6 171 57.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-42 177.2 171 54.4
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 2.4e-42 176.0 171 67.3
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 3.2e-42 175.6 160 56.9
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 7.1e-42 174.5 169 55.6
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 9.3e-42 174.1 149 71.1
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 9.3e-42 174.1 168 69.0
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.2e-41 173.7 151 74.8
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.2e-41 173.7 151 74.8
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.2e-41 173.7 166 54.8
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.2e-41 173.7 126 86.5
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.1e-41 172.9 143 76.2
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.1e-41 172.9 143 76.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.1e-41 172.9 143 76.2
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 4.6e-41 171.8 171 57.3
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 7.8e-41 171.0 171 64.9
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 3.0e-40 169.1 171 67.3
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 3.0e-40 169.1 168 63.7
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.9e-40 168.7 171 52.0
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 3.9e-40 168.7 167 68.3
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 8.7e-40 167.5 165 67.3
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.5e-39 166.8 167 65.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.9e-39 166.4 169 68.6
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.9e-39 166.4 159 66.7
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 4.3e-39 165.2 171 64.3
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.6e-39 164.9 168 67.9
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 9.6e-39 164.1 161 65.8
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.1e-38 162.9 154 68.8
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 2.1e-38 162.9 175 66.3
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.1e-38 162.9 169 66.9
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.8e-38 162.5 162 53.7
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 4.8e-38 161.8 161 66.5
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 4.8e-38 161.8 166 65.1
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 6.2e-38 161.4 172 51.2
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.1e-37 160.6 182 52.2
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.1e-37 160.6 161 66.5
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.1e-37 160.6 161 66.5
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.4e-37 160.2 175 66.3
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.4e-37 160.2 171 62.0
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.8e-37 159.8 154 67.5
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 4.0e-37 158.7 126 79.4
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 6.9e-37 157.9 160 67.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 6.9e-37 157.9 160 67.5
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 6.9e-37 157.9 175 63.4
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 6.9e-37 157.9 175 63.4
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 6.9e-37 157.9 174 64.9
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 9.0e-37 157.5 172 61.6
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 2.0e-36 156.4 168 53.6
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 2.0e-36 156.4 172 48.8
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.6e-36 156.0 166 64.5
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.6e-36 156.0 173 61.3
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 4.4e-36 155.2 173 61.8
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 4.4e-36 155.2 164 61.0
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 5.8e-36 154.8 172 62.8
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 5.8e-36 154.8 171 61.4
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 5.8e-36 154.8 171 61.4
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 7.6e-36 154.5 172 61.6
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.7e-35 153.3 175 63.4
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.2e-35 152.9 172 61.6
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.9e-35 152.5 160 64.4
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 3.8e-35 152.1 170 62.9
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.8e-35 152.1 172 62.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 6.4e-35 151.4 170 58.2
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 8.4e-35 151.0 171 48.5
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.1e-34 150.6 172 61.0
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.4e-34 150.2 172 59.9
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 5.4e-34 148.3 160 63.1
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 7.1e-34 147.9 150 68.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 9.3e-34 147.5 173 47.4
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 9.3e-34 147.5 163 66.9
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.6e-33 146.7 173 60.7
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 4.6e-33 145.2 163 64.4
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 4.6e-33 145.2 173 56.6
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 6.0e-33 144.8 166 49.4
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.0e-32 144.1 174 59.2
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 2.3e-32 142.9 150 68.0
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 6.6e-32 141.4 82 80.5
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 4.3e-31 138.7 160 60.0
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 4.3e-31 138.7 151 49.0
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 2.1e-30 136.3 176 59.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 4.8e-30 135.2 175 57.7
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 2.0e-28 129.8 168 60.7
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 7.6e-28 127.9 168 58.3
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.7e-27 126.7 169 59.2
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.2e-27 126.3 168 59.5
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 2.2e-27 126.3 79 70.9
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.8e-27 125.6 170 58.8
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 3.8e-27 125.6 170 58.2
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 4.9e-27 125.2 170 58.2
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 4.9e-27 125.2 170 58.2
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 6.4e-27 124.8 124 49.2
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 8.4e-27 124.4 168 56.0
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.4e-26 122.9 132 65.2
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.4e-26 122.9 132 65.2
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.6e-25 120.2 171 56.7
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 6.7e-24 114.8 129 49.6
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 3.3e-23 112.5 129 48.8
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 4.3e-23 112.1 65 81.5
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 5.6e-23 111.7 130 62.3
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.6e-22 110.2 66 78.8
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.0e-19 100.9 135 45.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.0e-16 90.9 111 45.0
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.8e-16 90.1 99 73.7
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.1e-15 87.4 152 36.8
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.5e-15 87.0 121 41.3
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 1.3e-11 73.9 101 68.3


User provided reference genes

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