Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.9e-164 582.4 286 100.0
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 5.9e-134 481.1 267 89.9
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 2.0e-126 456.1 240 92.9
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.3e-124 448.7 299 77.3
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 3.4e-121 438.7 233 91.8
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.9e-101 372.1 256 71.5
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 6.6e-101 371.3 272 66.2
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 9.5e-100 367.5 241 73.9
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 3.7e-96 355.5 292 60.6
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 7.1e-95 351.3 226 74.3
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 9.2e-95 350.9 244 70.1
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 2.3e-93 346.3 258 67.4
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.3e-92 342.4 248 66.9
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 1.6e-91 340.1 250 66.4
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.8e-91 339.3 256 63.7
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 6.2e-91 338.2 257 65.4
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.4e-90 337.0 267 64.0
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 2.4e-90 336.3 249 64.7
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 2.4e-90 336.3 248 66.1
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 5.2e-90 335.1 272 62.9
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.2e-89 334.0 244 63.9
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 2.0e-89 333.2 242 64.5
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.6e-89 332.8 248 64.9
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 9.9e-89 330.9 240 67.1
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.7e-88 330.1 260 63.5
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.2e-88 329.7 247 63.2
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 2.2e-88 329.7 240 67.5
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 8.4e-88 327.8 258 60.5
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.1e-87 327.4 252 62.3
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.4e-87 327.0 242 66.1
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.4e-87 327.0 239 67.4
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 1.4e-87 327.0 239 67.4
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 3.2e-87 325.9 247 63.2
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 5.4e-87 325.1 252 63.1
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 5.4e-87 325.1 243 65.4
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 7.1e-87 324.7 238 66.0
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 9.3e-87 324.3 287 58.2
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 9.3e-87 324.3 239 65.7
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.6e-86 323.6 259 60.2
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 3.5e-86 322.4 259 61.0
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 4.6e-86 322.0 256 60.2
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 6.0e-86 321.6 246 61.4
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.7e-85 320.1 249 59.8
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 1.7e-85 320.1 278 56.5
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.7e-85 320.1 254 61.0
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 2.3e-85 319.7 249 61.8
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 3.0e-85 319.3 262 59.5
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 3.9e-85 318.9 232 66.8
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 6.6e-85 318.2 249 61.4
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 8.7e-85 317.8 279 60.6
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.9e-84 316.6 246 61.0
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.9e-84 316.6 242 63.2
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.5e-84 316.2 271 57.6
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 5.6e-84 315.1 257 61.1
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 5.6e-84 315.1 271 59.0
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 7.3e-84 314.7 266 59.0
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 9.6e-84 314.3 246 63.4
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 9.6e-84 314.3 248 59.3
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.1e-83 313.2 234 64.1
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.8e-83 312.8 264 58.3
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 2.0e-81 306.6 239 65.7
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 4.4e-81 305.4 248 60.5
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.3e-80 303.9 278 57.6
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.7e-80 303.5 279 57.3
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 3.8e-80 302.4 269 57.6
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 6.4e-80 301.6 245 61.2
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 2.4e-79 299.7 260 64.6
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 3.2e-79 299.3 253 59.3
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 7.1e-79 298.1 228 61.8
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 7.1e-79 298.1 245 64.1
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 2.7e-78 296.2 249 59.8
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 3.0e-77 292.7 251 59.8
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.5e-76 290.4 257 56.4
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.6e-75 285.8 216 63.9
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 3.6e-75 285.8 270 55.9
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 9.0e-74 281.2 255 56.1
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 4.5e-73 278.9 234 59.4
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 1.3e-72 277.3 257 59.1
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 1.1e-71 274.2 249 57.0
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 1.4e-71 273.9 244 58.6
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 4.2e-71 272.3 259 52.9
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 9.3e-71 271.2 244 58.6
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.0e-69 267.7 391 39.6
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 2.3e-69 266.5 247 53.4
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.1e-67 260.0 196 61.7
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 5.3e-66 255.4 204 61.8
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.0e-65 253.4 188 67.6
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 1.3e-64 250.8 324 41.7
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 8.4e-64 248.1 209 57.9
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.1e-62 243.4 207 59.9
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 3.0e-61 239.6 234 53.4
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.1e-58 231.1 245 49.0
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 3.1e-58 229.6 152 69.7
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.4e-55 220.7 278 48.2
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.4e-55 220.7 278 48.2
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.0e-53 213.0 258 48.8
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.3e-51 207.6 156 62.2
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 2.0e-49 200.3 162 58.0
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.9e-48 196.4 152 58.6
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 7.9e-46 188.3 138 66.7
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.0e-45 188.0 151 59.6
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 5.1e-45 185.7 112 81.2
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 2.6e-44 183.3 190 54.2
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 2.6e-44 183.3 125 68.8
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.7e-43 180.6 213 45.5
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 4.1e-42 176.0 132 62.9
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 6.9e-42 175.3 132 62.9
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 2.6e-41 173.3 130 63.8
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 4.5e-41 172.6 121 64.5
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 5.9e-41 172.2 149 57.7
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 5.9e-41 172.2 132 62.1
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 2.5e-39 166.8 138 60.9
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 4.2e-39 166.0 133 59.4
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.3e-36 156.4 117 61.5
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 6.3e-35 152.1 139 56.8
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 1.2e-33 147.9 284 35.9
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 3.3e-28 129.8 319 30.7
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 5.7e-28 129.0 237 35.4
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 5.3e-26 122.5 92 64.1
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 2.0e-25 120.6 100 58.0
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.3e-24 117.9 100 60.0
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.7e-24 117.5 103 58.3
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 2.1e-22 110.5 95 62.1
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.4e-21 107.8 71 66.2
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 2.0e-20 104.0 124 46.0
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 2.0e-20 104.0 98 49.0
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 3.4e-20 103.2 56 80.4
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 7.0e-18 95.5 166 36.7
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 8.5e-16 88.6 71 60.6
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 4.7e-14 82.8 61 60.7
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 3.1e-10 70.1 70 51.4
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 1.9e-07 60.8 41 65.9
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 7.3e-07 58.9 33 78.8


User provided reference genes

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