Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 1.5e-101 372.9 195 100.0
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 1.4e-73 280.0 205 77.1
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 2.3e-73 279.3 204 77.5
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 3.0e-73 278.9 203 77.8
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 3.0e-73 278.9 205 77.6
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 4.0e-73 278.5 204 76.5
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 1.5e-72 276.6 205 75.6
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 1.5e-67 260.0 191 73.8
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 1.9e-67 259.6 191 72.8
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 7.3e-67 257.7 196 71.4
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 8.9e-65 250.8 202 67.3
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 4.4e-64 248.4 197 68.5
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 5.7e-64 248.1 196 67.3
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 9.8e-64 247.3 195 69.7
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.3e-63 246.9 196 69.4
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.7e-63 246.5 197 69.0
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 3.7e-63 245.4 191 68.1
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 3.7e-63 245.4 193 68.9
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 6.4e-63 244.6 192 69.3
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 6.4e-63 244.6 192 69.3
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 8.3e-63 244.2 194 67.0
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 8.3e-63 244.2 195 68.2
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 1.1e-62 243.8 201 66.7
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 1.4e-62 243.4 192 68.8
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.4e-62 243.4 192 68.8
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 1.4e-62 243.4 193 66.3
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 1.8e-62 243.0 195 67.7
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.8e-62 243.0 192 68.2
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 2.4e-62 242.7 194 68.0
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 2.4e-62 242.7 193 66.8
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 3.2e-62 242.3 196 67.9
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 3.2e-62 242.3 194 67.5
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 5.4e-62 241.5 197 65.5
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 5.4e-62 241.5 200 65.5
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 7.0e-62 241.1 201 67.2
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 7.0e-62 241.1 195 66.7
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 9.2e-62 240.7 198 67.2
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 1.2e-61 240.4 200 65.5
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 1.2e-61 240.4 197 66.5
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 1.6e-61 240.0 198 65.2
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 2.0e-61 239.6 206 63.1
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 2.0e-61 239.6 192 67.7
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 3.5e-61 238.8 201 67.7
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 3.5e-61 238.8 199 65.3
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 3.5e-61 238.8 198 65.2
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 3.5e-61 238.8 194 65.5
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 4.6e-61 238.4 201 64.2
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 4.6e-61 238.4 192 68.2
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 5.9e-61 238.0 195 67.7
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 7.8e-61 237.7 199 65.3
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 7.8e-61 237.7 192 67.2
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.3e-60 236.9 200 66.0
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 1.3e-60 236.9 195 67.7
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 1.3e-60 236.9 196 63.3
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 1.3e-60 236.9 200 63.0
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 2.3e-60 236.1 196 65.8
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 2.3e-60 236.1 200 64.5
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 3.9e-60 235.3 194 66.0
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 5.0e-60 235.0 196 65.3
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 5.0e-60 235.0 191 65.4
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 8.6e-60 234.2 198 64.1
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 8.6e-60 234.2 200 63.0
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 1.1e-59 233.8 199 63.8
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 1.1e-59 233.8 201 65.2
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 2.5e-59 232.6 198 63.6
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 2.5e-59 232.6 198 63.6
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 2.5e-59 232.6 193 65.8
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.3e-59 232.3 192 66.7
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 3.3e-59 232.3 194 66.0
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 4.3e-59 231.9 195 66.7
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 5.6e-59 231.5 196 61.7
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 7.3e-59 231.1 198 64.6
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 7.3e-59 231.1 196 65.3
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 9.5e-59 230.7 201 63.2
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 1.2e-58 230.3 198 63.1
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 1.2e-58 230.3 194 63.4
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 1.2e-58 230.3 198 61.6
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 1.6e-58 229.9 198 63.1
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 1.6e-58 229.9 195 66.2
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 4.7e-58 228.4 195 65.1
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 6.2e-58 228.0 212 62.7
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 8.0e-58 227.6 199 64.3
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 1.1e-57 227.3 198 63.1
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.4e-57 226.9 183 67.8
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 1.8e-57 226.5 191 64.4
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 5.2e-57 224.9 204 61.8
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 3.4e-56 222.2 199 63.3
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 4.4e-56 221.9 211 61.1
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 5.8e-56 221.5 196 58.7
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.0e-54 214.5 187 62.6
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 2.0e-53 213.0 202 60.9
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 1.0e-52 210.7 194 61.3
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 8.6e-52 207.6 186 62.4
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 2.8e-50 202.6 187 61.0
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 7.5e-48 194.5 196 56.6
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 3.2e-46 189.1 189 55.0
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 4.3e-43 178.7 143 67.8
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 1.8e-41 173.3 143 66.4
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 9.9e-40 167.5 189 53.4
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 2.4e-38 162.9 168 56.5
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 5.4e-38 161.8 148 64.2
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.6e-37 160.2 212 43.9
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 1.3e-28 130.6 128 57.0
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 1.2e-24 117.5 93 64.5
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 7.1e-22 108.2 136 46.3
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 5.6e-19 98.6 139 43.2
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 5.3e-17 92.0 86 58.1
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 2.6e-16 89.7 73 60.3
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 9.9e-16 87.8 73 58.9
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 5.1e-12 75.5 59 66.1
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 4.3e-11 72.4 72 55.6
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 7.4e-11 71.6 43 76.7
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.4e-11 71.6 61 59.0
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.4e-11 71.6 61 59.0
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.4e-11 71.6 61 59.0
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.3e-10 70.9 61 57.4
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 4.8e-10 68.9 61 57.4
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 6.2e-10 68.6 61 57.4
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.1e-09 67.8 61 55.7
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 4.0e-09 65.9 101 44.6
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 2.2e-07 60.1 104 43.3


User provided reference genes

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