Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 9.3e-84 313.5 162 100.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.2e-68 261.9 144 93.8
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 3.2e-68 261.9 144 93.8
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.1e-68 260.8 144 93.1
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 7.1e-68 260.8 144 93.8
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.6e-67 258.1 144 92.4
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 6.2e-64 247.7 144 86.8
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 6.9e-63 244.2 137 89.8
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 2.0e-62 242.7 145 87.6
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 3.4e-62 241.9 144 86.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 4.5e-62 241.5 137 88.3
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.5e-62 241.5 140 87.1
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 5.8e-62 241.1 144 83.3
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.3e-61 240.0 137 87.6
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.3e-61 240.0 137 89.1
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.7e-61 239.6 144 84.7
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.9e-61 238.8 158 79.7
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.8e-61 238.4 144 84.0
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 3.8e-61 238.4 144 84.7
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 4.9e-61 238.0 138 85.5
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 4.9e-61 238.0 137 86.1
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 6.5e-61 237.7 137 85.4
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 6.5e-61 237.7 145 83.4
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 8.4e-61 237.3 144 82.6
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 8.4e-61 237.3 140 84.3
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.4e-60 236.5 137 86.1
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.4e-60 236.5 137 87.6
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.9e-60 236.1 137 86.1
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.9e-60 236.1 144 84.0
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.9e-60 236.1 147 81.0
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.5e-60 235.7 144 83.3
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 3.2e-60 235.3 147 81.6
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 3.2e-60 235.3 144 83.3
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 5.5e-60 234.6 139 83.5
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 5.5e-60 234.6 144 81.9
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 5.5e-60 234.6 154 77.3
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 9.3e-60 233.8 137 84.7
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 9.3e-60 233.8 140 83.6
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.2e-59 233.4 158 78.5
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.2e-59 233.4 138 84.8
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.2e-59 233.4 137 86.1
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.6e-59 233.0 138 84.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.6e-59 233.0 137 86.9
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.6e-59 233.0 138 84.1
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.6e-59 233.0 144 81.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.1e-59 232.6 144 81.2
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 2.1e-59 232.6 142 82.4
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.7e-59 232.3 147 80.3
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.7e-59 232.3 147 80.3
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 2.7e-59 232.3 144 81.2
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 3.5e-59 231.9 138 83.3
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 3.5e-59 231.9 141 85.8
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.5e-59 231.9 137 84.7
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 4.6e-59 231.5 140 81.4
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 4.6e-59 231.5 138 84.1
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 6.0e-59 231.1 136 84.6
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 7.9e-59 230.7 137 85.4
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.0e-58 230.3 167 74.3
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.3e-58 229.9 145 82.1
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.8e-58 229.6 137 83.9
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.8e-58 229.6 138 82.6
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.8e-58 229.6 138 82.6
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.3e-58 229.2 137 83.9
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.9e-58 228.4 138 81.9
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.9e-58 228.4 138 81.9
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.9e-58 228.4 140 82.9
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 5.1e-58 228.0 137 82.5
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 5.1e-58 228.0 137 83.2
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 5.1e-58 228.0 135 85.2
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 6.7e-58 227.6 144 82.6
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 6.7e-58 227.6 137 82.5
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 8.7e-58 227.3 138 81.9
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 8.7e-58 227.3 138 81.2
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 8.7e-58 227.3 144 82.6
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 8.7e-58 227.3 137 83.9
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-57 226.9 137 82.5
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-57 226.9 137 82.5
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-57 226.9 146 80.8
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.1e-57 226.9 143 81.1
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.1e-57 226.9 143 81.1
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.9e-57 226.1 137 83.2
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.9e-57 226.1 139 82.0
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.9e-57 226.1 146 80.1
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.5e-57 225.7 146 80.1
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 5.7e-57 224.6 139 82.0
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 7.4e-57 224.2 136 82.4
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 7.4e-57 224.2 136 82.4
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 7.4e-57 224.2 136 82.4
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 7.4e-57 224.2 136 82.4
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 7.4e-57 224.2 145 80.7
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 7.4e-57 224.2 143 80.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 9.6e-57 223.8 138 81.9
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.3e-56 223.4 137 82.5
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.3e-56 223.4 139 80.6
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.6e-56 223.0 137 82.5
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.8e-56 222.2 147 78.2
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 3.7e-56 221.9 139 83.5
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.7e-56 221.9 146 78.8
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.7e-56 221.9 146 78.1
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.7e-56 221.9 137 83.2
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 4.8e-56 221.5 135 82.2
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 4.8e-56 221.5 136 86.0
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 6.3e-56 221.1 145 79.3
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 8.2e-56 220.7 144 77.8
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 8.2e-56 220.7 147 77.6
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 8.2e-56 220.7 132 83.3
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.4e-55 219.9 136 81.6
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.4e-55 219.9 141 80.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 4.5e-54 214.9 139 77.7
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 5.9e-54 214.5 171 67.8
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 8.4e-53 210.7 180 64.4
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 5.5e-52 208.0 139 78.4
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 7.9e-51 204.1 187 61.5
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.0e-50 203.8 119 86.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-50 203.4 123 86.2
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 6.7e-50 201.1 198 57.1
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 6.7e-50 201.1 118 87.3
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.5e-49 199.9 136 77.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 7.4e-49 197.6 146 73.3
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 6.3e-48 194.5 142 69.0
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 3.1e-47 192.2 133 72.2
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.2e-46 190.3 118 82.2
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 2.0e-46 189.5 134 70.1
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 3.4e-46 188.7 113 85.8
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 2.5e-44 182.6 141 63.8
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-43 180.3 140 69.3
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 3.6e-43 178.7 137 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 6.1e-43 177.9 138 62.3
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.7e-41 170.6 102 84.3
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-40 169.9 109 81.7
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 9.1e-39 164.1 98 82.7
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.9e-37 159.1 169 55.6
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.1e-35 151.4 99 77.8
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 2.2e-32 142.9 94 77.7
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 4.1e-31 138.7 84 81.0
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 7.0e-31 137.9 101 70.3
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 9.1e-31 137.5 85 76.5
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 9.1e-31 137.5 85 78.8
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-30 136.3 82 84.1
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 3.2e-28 129.0 134 47.0
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.7e-27 125.9 131 47.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.6e-27 125.6 97 69.1
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.8e-26 123.2 94 64.9
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.8e-26 123.2 113 61.9
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.6e-25 119.4 135 45.2
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.7e-24 116.7 78 78.2
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.1e-23 114.0 99 64.6
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.4e-23 113.6 75 74.7
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 5.3e-23 111.7 132 40.9
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.9e-20 103.2 66 77.3
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.5e-17 93.6 54 83.3
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.3e-16 88.2 57 77.2
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.5e-14 82.4 45 93.3
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 8.5e-13 77.8 44 86.4
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.9e-12 76.6 44 84.1
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.0e-10 70.9 111 45.0
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.8e-10 70.1 114 43.9
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.8e-10 70.1 114 43.9
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.0e-10 68.9 114 43.9
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.8e-10 68.2 114 43.0
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 2.2e-08 63.2 115 40.9
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.9e-08 62.0 36 86.1


User provided reference genes

Program Settings