Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G943.8 Capsicum annuum HOM05D002887 ORTHO05D003159 1.3e-111 406.4 208 100.0
CAN.G623.82 Capsicum annuum HOM05D002887 ORTHO05D003159 6.9e-108 394.0 208 96.6
CAN.G623.91 Capsicum annuum HOM05D002887 ORTHO05D003159 7.6e-107 390.6 208 96.2
CAN.G623.97 Capsicum annuum HOM05D002887 ORTHO05D003159 3.2e-73 278.9 189 78.8
CAN.G943.15 Capsicum annuum HOM05D002887 ORTHO05D003159 3.2e-73 278.9 189 78.8
CAN.G943.17 Capsicum annuum HOM05D002887 ORTHO05D003159 3.2e-73 278.9 189 78.8
CAN.G623.93 Capsicum annuum HOM05D002887 ORTHO05D003159 1.8e-71 273.1 180 80.6
CAN.G623.94 Capsicum annuum HOM05D002887 ORTHO05D003159 1.2e-70 270.4 145 94.5
CAN.G623.83 Capsicum annuum HOM05D002887 ORTHO05D003159 7.5e-70 267.7 189 77.8
CAN.G943.10 Capsicum annuum HOM05D002887 ORTHO05D003159 8.9e-63 244.2 188 71.8
CAN.G523.32 Capsicum annuum HOM05D002887 ORTHO05D003159 1.3e-61 240.4 189 69.8
CAN.G623.89 Capsicum annuum HOM05D002887 ORTHO05D003159 4.7e-56 221.9 188 66.0
CAN.G943.12 Capsicum annuum HOM05D002887 ORTHO05D003159 6.4e-53 211.5 191 63.4
Nitab4.5_0000294g0200 Nicotiana tabacum HOM05D002887 ORTHO05D003159 4.1e-52 208.8 185 63.2
Peaxi162Scf00232g00091 Petunia axillaris HOM05D002887 ORTHO05D003159 2.8e-48 196.1 185 62.7
CAN.G623.87 Capsicum annuum HOM05D002887 ORTHO05D003159 1.8e-47 193.4 188 61.7
Nitab4.5_0001235g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 1.5e-46 190.3 187 57.8
CAN.G623.84 Capsicum annuum HOM05D002887 ORTHO05D003159 5.8e-46 188.3 97 93.8
PGSC0003DMG400022247 Solanum tuberosum HOM05D002887 ORTHO05D003159 9.8e-46 187.6 152 65.8
CAN.G623.99 Capsicum annuum HOM05D002887 ORTHO05D003159 6.0e-43 178.3 199 56.8
Solyc07g066240.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 6.6e-42 174.9 143 64.3
Sopen07g034420 Solanum pennellii HOM05D002887 ORTHO05D003159 8.6e-42 174.5 143 64.3
Oeu052878.1 Olea europaea HOM05D002887 ORTHO05D003159 1.7e-37 160.2 192 51.6
GSVIVG01014858001 Vitis vinifera HOM05D002887 ORTHO05D003159 9.2e-36 154.5 195 47.7
QL08p000165 Quercus lobata HOM05D002887 ORTHO05D003159 2.5e-33 146.4 190 46.8
Cfa016970 Carpinus fangiana HOM05D002887 ORTHO05D003159 1.2e-32 144.1 191 46.6
Migut.H01703 Erythranthe guttata HOM05D002887 ORTHO05D003159 1.2e-32 144.1 186 48.4
Lj1C902G8 Lonicera japonica HOM05D002887 ORTHO05D003159 3.1e-31 139.4 191 43.5
Atru.chr2.3909 Acer truncatum HOM05D002887 ORTHO05D003159 5.2e-31 138.7 196 44.4
Haze_09925 Corylus avellana HOM05D002887 ORTHO05D003159 1.5e-30 137.1 191 45.5
CSS0039257 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 2.9e-29 132.9 182 44.5
Actinidia37103 Actinidia chinensis HOM05D002887 ORTHO05D003159 3.8e-29 132.5 185 47.6
CSS0049070 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 8.4e-29 131.3 136 52.9
Ciclev10007786m.g Citrus clementina HOM05D002887 ORTHO05D003159 8.4e-29 131.3 189 46.0
TWI39G1273 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 1.4e-28 130.6 142 52.8
CARHR045290 Cardamine hirsuta HOM05D002887 ORTHO05D003159 1.9e-28 130.2 169 46.7
MD11G1047600 Malus domestica HOM05D002887 ORTHO05D003159 4.2e-28 129.0 138 53.6
CAN.G623.88 Capsicum annuum HOM05D002887 ORTHO05D003159 1.6e-27 127.1 163 50.3
Prupe.6G036600 Prunus persica HOM05D002887 ORTHO05D003159 1.6e-27 127.1 187 43.9
ClCG09G021800 Citrullus lanatus HOM05D002887 ORTHO05D003159 2.7e-27 126.3 208 40.9
HanXRQChr11g0335231 Helianthus annuus HOM05D002887 ORTHO05D003159 2.7e-27 126.3 187 42.8
CAN.G943.7 Capsicum annuum HOM05D002887 ORTHO05D003159 1.3e-26 124.0 79 79.7
CsaV3_7G021230 Cucumis sativus L. HOM05D002887 ORTHO05D003159 1.7e-26 123.6 215 38.6
MELO3C013232.2 Cucumis melo HOM05D002887 ORTHO05D003159 2.3e-26 123.2 215 38.6
RcHm_v2.0_Chr5g0074291 Rosa chinensis HOM05D002887 ORTHO05D003159 2.3e-26 123.2 189 43.9
CAN.G623.100 Capsicum annuum HOM05D002887 ORTHO05D003159 8.7e-26 121.3 146 52.7
FAN21G1274 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.6e-24 117.1 191 41.4
FAN25G0222 Fragaria x ananassa HOM05D002887 ORTHO05D003159 2.1e-24 116.7 191 40.8
Sed0024070 Sechium edule HOM05D002887 ORTHO05D003159 2.1e-24 116.7 140 47.9
FAN11G2314 Fragaria x ananassa HOM05D002887 ORTHO05D003159 2.8e-24 116.3 191 40.8
ECA236G4850 Erigeron canadensis HOM05D002887 ORTHO05D003159 1.1e-23 114.4 143 44.8
Manes.06G049300 Manihot esculenta HOM05D002887 ORTHO05D003159 2.4e-23 113.2 195 41.0
FAN16G2949 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.2e-22 110.9 179 42.5
Cc05_g15820 Coffea canephora HOM05D002887 ORTHO05D003159 4.4e-22 109.0 194 38.1
Dinv19635 Davidia involucrata HOM05D002887 ORTHO05D003159 3.8e-21 105.9 106 54.7
Zm00001eb199550 Zea mays HOM05D002887 ORTHO05D003159 3.8e-21 105.9 132 43.2
Cc09_g10430 Coffea canephora HOM05D002887 ORTHO05D003159 5.4e-20 102.1 165 38.2
MSTRG.14532 Avicennia marina HOM05D002887 ORTHO05D003159 9.3e-20 101.3 153 47.1
vmacro09794 Vaccinium macrocarpon HOM05D002887 ORTHO05D003159 1.6e-19 100.5 107 52.3
CAN.G588.111 Capsicum annuum HOM05D002887 ORTHO05D003159 2.1e-19 100.1 138 39.9
Peaxi162Scf00362g00430 Petunia axillaris HOM05D002887 ORTHO05D003159 2.7e-19 99.8 138 39.9
SGA_v2.0_scaffold32G13321 Striga asiatica HOM05D002887 ORTHO05D003159 2.7e-19 99.8 139 40.3
DCAR_016809 Daucus carota HOM05D002887 ORTHO05D003159 4.6e-19 99.0 107 51.4
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 4.6e-19 99.0 156 39.7
HPP92_003489 Vanilla planifolia HOM05D002887 ORTHO05D003159 6.0e-19 98.6 147 38.8
HPP92_026887 Vanilla planifolia HOM05D002887 ORTHO05D003159 6.0e-19 98.6 147 38.8
DCAR_022829 Daucus carota HOM05D002887 ORTHO05D003159 1.0e-18 97.8 166 38.0
Rhsim04G0006800 Rhododendron simsii HOM05D002887 ORTHO05D003159 1.0e-18 97.8 148 43.9
unitig_37.g12833 Utricularia gibba HOM05D002887 ORTHO05D003159 3.0e-18 96.3 167 37.7
AT1G55590 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 3.9e-18 95.9 105 53.3
Nitab4.5_0003679g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 5.1e-18 95.5 164 36.0
Sabra11G0137200 Salix brachista HOM05D002887 ORTHO05D003159 5.1e-18 95.5 138 46.4
Nitab4.5_0004557g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 6.6e-18 95.1 164 36.0
Solyc01g111890.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 6.6e-18 95.1 164 35.4
Sopen01g053930 Solanum pennellii HOM05D002887 ORTHO05D003159 6.6e-18 95.1 164 35.4
BcaC08g43637 Brassica carinata HOM05D002887 ORTHO05D003159 8.7e-18 94.7 146 42.5
C06p10530 Brassica napus HOM05D002887 ORTHO05D003159 8.7e-18 94.7 146 42.5
BolC6t36133H Brassica oleracea HOM05D002887 ORTHO05D003159 8.7e-18 94.7 146 42.5
Carub.0001s4411 Capsella rubella HOM05D002887 ORTHO05D003159 8.7e-18 94.7 105 52.4
THA.LOC104804318 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 8.7e-18 94.7 139 39.6
AL1G63640 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 1.1e-17 94.4 105 52.4
Aa31LG10G620 Aethionema arabicum HOM05D002887 ORTHO05D003159 1.5e-17 94.0 105 50.5
Ah.01g023360 Amaranthus hybridus HOM05D002887 ORTHO05D003159 1.5e-17 94.0 139 38.1
arahy.Tifrunner.gnm1.ann1.DJ9YQ7 Arachis hypogaea HOM05D002887 ORTHO05D003159 1.5e-17 94.0 138 39.1
arahy.Tifrunner.gnm1.ann1.HJG5YQ Arachis hypogaea HOM05D002887 ORTHO05D003159 1.5e-17 94.0 138 39.1
MSTRG.19965 Avicennia marina HOM05D002887 ORTHO05D003159 1.5e-17 94.0 148 37.8
A06p00120 Brassica napus HOM05D002887 ORTHO05D003159 1.5e-17 94.0 146 43.2
BraA06t23230Z Brassica rapa HOM05D002887 ORTHO05D003159 1.5e-17 94.0 146 43.2
CiPaw.05G086400 Carya illinoinensis HOM05D002887 ORTHO05D003159 1.9e-17 93.6 139 38.1
SalBow1G7852 Salvia bowleyana HOM05D002887 ORTHO05D003159 1.9e-17 93.6 145 37.9
Rhsim11G0194600 Rhododendron simsii HOM05D002887 ORTHO05D003159 2.5e-17 93.2 139 39.6
PGSC0003DMG400018645 Solanum tuberosum HOM05D002887 ORTHO05D003159 2.5e-17 93.2 164 34.8
Sp1g41210 Schrenkiella parvula HOM05D002887 ORTHO05D003159 3.3e-17 92.8 105 51.4
Oeu029657.1 Olea europaea HOM05D002887 ORTHO05D003159 4.3e-17 92.4 167 37.1
Thhalv10011328m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 5.6e-17 92.0 105 51.4
Gohir.A12G035800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 5.6e-17 92.0 138 38.4
Gohir.D12G036800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 5.6e-17 92.0 138 38.4
Gorai.008G038000 Gossypium raimondii HOM05D002887 ORTHO05D003159 5.6e-17 92.0 138 38.4
Potri.011G169800 Populus trichocarpa HOM05D002887 ORTHO05D003159 5.6e-17 92.0 138 46.4
SGA_v2.0_scaffold49G18166 Striga asiatica HOM05D002887 ORTHO05D003159 5.6e-17 92.0 141 44.0
Actinidia20539 Actinidia chinensis HOM05D002887 ORTHO05D003159 7.3e-17 91.7 165 36.4
PGR142G2418 Punica granatum HOM05D002887 ORTHO05D003159 7.3e-17 91.7 138 39.1
Migut.B00042 Erythranthe guttata HOM05D002887 ORTHO05D003159 9.6e-17 91.3 167 36.5
BcaB07g33199 Brassica carinata HOM05D002887 ORTHO05D003159 1.3e-16 90.9 138 44.2
Lsat_1_v5_gn_3_47320 Lactuca sativa HOM05D002887 ORTHO05D003159 1.6e-16 90.5 139 36.0
Sabra04G0120900 Salix brachista HOM05D002887 ORTHO05D003159 1.6e-16 90.5 135 40.7
CSS0044899 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 2.1e-16 90.1 135 39.3
Potri.004G179571 Populus trichocarpa HOM05D002887 ORTHO05D003159 2.1e-16 90.1 138 38.4
CiPaw.06G119200 Carya illinoinensis HOM05D002887 ORTHO05D003159 2.8e-16 89.7 139 37.4
Glyma.20G105000 Glycine max HOM05D002887 ORTHO05D003159 2.8e-16 89.7 139 37.4
THA.LOC104810311 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 3.6e-16 89.4 150 40.0
VMungo0720G3147 Vigna mungo HOM05D002887 ORTHO05D003159 3.6e-16 89.4 139 37.4
Ca_03284_v3 Cicer arietinum L. HOM05D002887 ORTHO05D003159 4.8e-16 89.0 138 37.0
Lalb_Chr06g0163831 Lupinus albus HOM05D002887 ORTHO05D003159 4.8e-16 89.0 166 35.5
CANSAT25G0878 Cannabis sativa HOM05D002887 ORTHO05D003159 6.2e-16 88.6 167 33.5
Potri.009G139500 Populus trichocarpa HOM05D002887 ORTHO05D003159 6.2e-16 88.6 164 35.4
Cfa005310 Carpinus fangiana HOM05D002887 ORTHO05D003159 8.1e-16 88.2 139 36.7
Eucgr.I01466 Eucalyptus grandis HOM05D002887 ORTHO05D003159 8.1e-16 88.2 138 38.4
FvH4_3g41370 Fragaria vesca HOM05D002887 ORTHO05D003159 8.1e-16 88.2 190 35.8
MBI14_g10260_MAGBIO Magnolia biondii HOM05D002887 ORTHO05D003159 8.1e-16 88.2 189 31.7
TWI75G1235 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 8.1e-16 88.2 148 38.5
Haze_02083 Corylus avellana HOM05D002887 ORTHO05D003159 1.1e-15 87.8 139 36.7
Manes.11G098300 Manihot esculenta HOM05D002887 ORTHO05D003159 1.1e-15 87.8 139 37.4
TPR.G2454 Trifolium pratense HOM05D002887 ORTHO05D003159 1.1e-15 87.8 138 36.2
ECA246G2827 Erigeron canadensis HOM05D002887 ORTHO05D003159 1.4e-15 87.4 173 33.5
Sed0001540 Sechium edule HOM05D002887 ORTHO05D003159 1.4e-15 87.4 136 39.7
Sed0016468 Sechium edule HOM05D002887 ORTHO05D003159 1.4e-15 87.4 136 39.7
COL.COLO4_18011 Corchorus olitorius HOM05D002887 ORTHO05D003159 1.8e-15 87.0 164 36.6
Prupe.8G170700 Prunus persica HOM05D002887 ORTHO05D003159 1.8e-15 87.0 139 36.7
Lj5g0021290 Lotus japonicus HOM05D002887 ORTHO05D003159 2.4e-15 86.7 164 34.8
vmacro02299 Vaccinium macrocarpon HOM05D002887 ORTHO05D003159 2.4e-15 86.7 162 35.8
GSVIVG01023957001 Vitis vinifera HOM05D002887 ORTHO05D003159 3.1e-15 86.3 148 37.2
Eucgr.J00763 Eucalyptus grandis HOM05D002887 ORTHO05D003159 4.0e-15 85.9 145 42.1
Ciclev10028005m.g Citrus clementina HOM05D002887 ORTHO05D003159 5.3e-15 85.5 165 33.9
Medtr1g114010 Medicago truncatula HOM05D002887 ORTHO05D003159 5.3e-15 85.5 138 36.2
Psat6g232960 Pisum sativum HOM05D002887 ORTHO05D003159 5.3e-15 85.5 135 37.0
SEGI_07697 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 6.9e-15 85.1 105 46.7
Phvul.007G016400 Phaseolus vulgaris HOM05D002887 ORTHO05D003159 1.2e-14 84.3 139 36.0
PGR119G2044 Punica granatum HOM05D002887 ORTHO05D003159 1.2e-14 84.3 104 44.2
Lsat_1_v5_gn_7_116000 Lactuca sativa HOM05D002887 ORTHO05D003159 2.0e-14 83.6 135 40.0
Lj5A175G92 Lonicera japonica HOM05D002887 ORTHO05D003159 3.4e-14 82.8 166 33.7
TWI79G0907 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 3.4e-14 82.8 144 36.1
Sed0003666 Sechium edule HOM05D002887 ORTHO05D003159 5.8e-14 82.0 139 35.3
ClCG02G003820 Citrullus lanatus HOM05D002887 ORTHO05D003159 7.6e-14 81.6 139 36.0
AagrBONN_evm.TU.Sc2ySwM_368.912 Anthoceros agrestis HOM05D002887 ORTHO05D003159 9.9e-14 81.3 135 37.8
MELO3C013321.2 Cucumis melo HOM05D002887 ORTHO05D003159 1.3e-13 80.9 139 35.3
CsaV3_7G001330 Cucumis sativus L. HOM05D002887 ORTHO05D003159 1.3e-13 80.9 139 36.0
SEGI_36055 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 2.1e-11 73.6 111 42.3
Hund00008 Selenicereus undatus HOM05D002887 ORTHO05D003159 7.9e-11 71.6 136 35.3
TWI79G0472 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 2.3e-10 70.1 139 33.8
FAN27G1571 Fragaria x ananassa HOM05D002887 ORTHO05D003159 5.1e-10 68.9 139 34.5
ATR0661G100 Amborella trichopoda HOM05D002887 ORTHO05D003159 8.7e-10 68.2 106 40.6
CARHR107340 Cardamine hirsuta HOM05D002887 ORTHO05D003159 2.5e-09 66.6 102 39.2
TAR625G0093 Trochodendron aralioides HOM05D002887 ORTHO05D003159 3.3e-09 66.2 102 40.2
Aa31LG8G14210 Aethionema arabicum HOM05D002887 ORTHO05D003159 5.6e-09 65.5 102 38.2
FAN15G2445 Fragaria x ananassa HOM05D002887 ORTHO05D003159 5.6e-09 65.5 102 41.2
FvH4_2g15790 Fragaria vesca HOM05D002887 ORTHO05D003159 9.6e-09 64.7 102 41.2
FAN24G2689 Fragaria x ananassa HOM05D002887 ORTHO05D003159 9.6e-09 64.7 102 41.2
Pp3c16_16630 Physcomitrium patens HOM05D002887 ORTHO05D003159 1.3e-08 64.3 106 40.6
Os03g0135400 Oryza sativa ssp. japonica HOM05D002887 ORTHO05D003159 1.6e-08 63.9 108 39.8
Sp3g30310 Schrenkiella parvula HOM05D002887 ORTHO05D003159 2.1e-08 63.5 102 38.2
Cpa.g.sc20.128 Carica papaya HOM05D002887 ORTHO05D003159 2.8e-08 63.2 112 36.6
FAN20G1407 Fragaria x ananassa HOM05D002887 ORTHO05D003159 2.8e-08 63.2 102 40.2
AT2G17020 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 4.8e-08 62.4 102 36.3
AUR62012987 Chenopodium quinoa HOM05D002887 ORTHO05D003159 4.8e-08 62.4 102 38.2
Thhalv10022585m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 4.8e-08 62.4 102 37.3
PSO675G9002 Papaver somniferum HOM05D002887 ORTHO05D003159 4.8e-08 62.4 102 35.3
RcHm_v2.0_Chr6g0279151 Rosa chinensis HOM05D002887 ORTHO05D003159 4.8e-08 62.4 102 38.2
Aqoxy6G01915 Aquilegia oxysepala HOM05D002887 ORTHO05D003159 6.2e-08 62.0 108 37.0
AUR62009999 Chenopodium quinoa HOM05D002887 ORTHO05D003159 6.2e-08 62.0 104 36.5
PSO541G1018 Papaver somniferum HOM05D002887 ORTHO05D003159 6.2e-08 62.0 102 35.3
EL10Ac9g21324 Beta vulgaris HOM05D002887 ORTHO05D003159 1.1e-07 61.2 104 36.5
Nn6g31882 Nelumbo nucifera HOM05D002887 ORTHO05D003159 1.1e-07 61.2 166 28.9
ECA236G2003 Erigeron canadensis HOM05D002887 ORTHO05D003159 1.8e-07 60.5 53 49.1
Carub.0003s3090 Capsella rubella HOM05D002887 ORTHO05D003159 2.4e-07 60.1 102 35.3
Duzib132G0895 Durio zibethinus HOM05D002887 ORTHO05D003159 2.4e-07 60.1 112 36.6
AL3G49810 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 3.1e-07 59.7 102 35.3
CDE05G0350 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 4.0e-07 59.3 102 38.2
Thecc.02G053100 Theobroma cacao HOM05D002887 ORTHO05D003159 4.0e-07 59.3 101 37.6
CDE05G3170 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 2.0e-06 57.0 102 37.3
HanXRQChr17g0543831 Helianthus annuus HOM05D002887 ORTHO05D003159 3.4e-06 56.2 104 33.7
MD05G1127000 Malus domestica HOM05D002887 ORTHO05D003159 4.5e-06 55.8 102 35.3
BcaB07g31745 Brassica carinata HOM05D002887 ORTHO05D003159 5.8e-06 55.5 102 34.3


User provided reference genes

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