Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 5.0e-221 770.8 381 100.0
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 4.0e-194 681.4 376 91.2
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.1e-191 673.3 378 88.4
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.4e-191 672.9 376 88.6
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.1e-187 659.1 379 87.9
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 6.1e-187 657.5 379 86.5
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 6.1e-187 657.5 376 88.3
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.4e-175 619.8 378 81.7
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.1e-175 618.2 372 82.5
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 3.5e-174 615.1 381 80.8
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 8.1e-171 604.0 383 77.5
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.4e-169 598.6 402 75.6
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.1e-167 593.6 403 74.2
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.4e-167 593.2 377 79.6
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 4.1e-167 591.7 378 77.0
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 3.5e-166 588.6 378 77.5
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 3.5e-166 588.6 378 77.0
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 3.0e-165 585.5 383 76.8
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 3.9e-165 585.1 379 77.3
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.5e-164 583.2 382 76.4
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.9e-164 582.8 381 76.4
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.5e-164 582.4 383 76.5
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.5e-164 582.4 381 76.4
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 5.6e-164 581.3 375 77.1
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 9.5e-164 580.5 378 75.9
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.6e-163 579.7 379 75.2
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.6e-163 578.6 378 76.2
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 4.7e-163 578.2 323 86.1
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 4.7e-163 578.2 381 74.8
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 6.2e-163 577.8 379 75.2
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 6.2e-163 577.8 377 76.1
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 6.8e-162 574.3 380 75.5
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 6.8e-162 574.3 381 74.8
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 8.9e-162 573.9 380 75.0
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.2e-161 573.5 380 75.5
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.2e-161 573.5 380 76.3
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.0e-161 572.8 379 76.0
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 9.9e-161 570.5 379 75.5
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.7e-160 569.7 380 75.3
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 3.8e-160 568.5 379 74.7
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 3.8e-160 568.5 328 82.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 8.4e-160 567.4 347 79.0
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.9e-159 566.2 384 72.9
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.9e-159 566.2 380 75.0
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 3.2e-159 565.5 384 72.9
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 3.2e-159 565.5 374 75.1
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.4e-159 564.7 394 72.3
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.6e-158 563.1 378 75.7
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.6e-158 563.1 382 74.6
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 2.1e-158 562.8 380 75.0
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 7.8e-158 560.8 384 74.2
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.0e-157 560.5 378 75.4
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.3e-157 560.1 376 74.5
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.3e-157 559.3 319 82.4
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 5.1e-157 558.1 380 73.2
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.1e-156 557.0 379 73.1
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.1e-156 557.0 383 73.1
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.9e-156 556.2 334 77.8
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.3e-156 555.4 380 71.1
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 3.3e-156 555.4 325 82.2
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 3.3e-156 555.4 318 84.0
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 3.3e-156 555.4 373 75.6
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 7.3e-156 554.3 377 75.3
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 9.6e-156 553.9 400 70.8
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 9.6e-156 553.9 380 72.9
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.2e-155 553.5 383 72.3
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.6e-155 553.1 381 73.5
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.1e-155 552.7 383 71.5
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 8.1e-155 550.8 387 72.6
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 8.1e-155 550.8 385 71.9
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.1e-154 550.4 377 72.1
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.8e-154 549.7 382 72.8
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 4.0e-154 548.5 386 72.0
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 5.3e-154 548.1 375 72.5
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 9.0e-154 547.4 323 79.9
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.2e-153 547.0 373 72.9
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.5e-153 546.6 379 71.0
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.6e-153 545.8 388 71.1
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.4e-153 545.4 380 70.5
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.7e-152 543.1 397 70.8
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.2e-152 542.7 384 70.1
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-151 539.7 387 70.3
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.9e-151 539.7 387 70.3
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 5.4e-151 538.1 382 69.6
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 9.3e-151 537.3 387 70.3
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 7.8e-150 534.3 385 69.9
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 7.8e-150 534.3 385 69.9
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 3.0e-149 532.3 320 78.8
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 5.1e-149 531.6 307 82.4
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 6.6e-149 531.2 383 69.5
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 8.7e-149 530.8 382 69.6
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.5e-148 530.0 383 70.0
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 5.6e-148 528.1 383 69.2
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 7.3e-148 527.7 384 70.1
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.3e-148 527.7 326 77.0
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.6e-147 526.6 379 68.9
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.6e-147 526.6 347 70.9
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.8e-147 525.8 320 77.2
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.2e-147 524.6 378 70.4
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.1e-146 523.9 317 79.2
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.1e-146 523.9 324 81.8
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.5e-145 520.0 379 71.2
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.3e-144 516.9 384 69.8
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.7e-144 516.5 381 68.8
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.9e-144 515.8 378 66.9
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 4.9e-144 515.0 378 69.6
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 6.4e-144 514.6 384 68.8
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 8.4e-144 514.2 385 69.4
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 4.2e-143 511.9 336 74.1
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.2e-143 511.9 322 74.5
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 6.0e-142 508.1 320 75.6
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 2.3e-141 506.1 351 73.8
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 5.6e-140 501.5 317 75.1
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 4.8e-139 498.4 315 73.7
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 8.1e-139 497.7 362 66.3
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 8.1e-139 497.7 378 66.1
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.1e-138 497.3 347 73.5
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 2.0e-137 493.0 300 74.7
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 4.5e-137 491.9 320 74.1
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 9.9e-137 490.7 347 74.6
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.7e-136 490.0 332 72.9
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.9e-135 486.5 351 71.5
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 3.3e-132 475.7 372 64.2
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 6.2e-131 471.5 351 70.4
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 2.4e-130 469.5 302 72.8
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 3.2e-127 459.1 325 70.8
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 6.7e-125 451.4 257 82.1
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 6.7e-125 451.4 257 82.1
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 6.3e-123 444.9 386 62.4
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.8e-122 443.4 241 88.0
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.8e-120 435.6 300 64.7
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 7.9e-118 427.9 370 57.3
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 4.1e-114 415.6 290 70.3
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 6.9e-114 414.8 300 64.7
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 9.1e-114 414.5 325 60.6
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 3.8e-112 409.1 325 67.1
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 5.1e-109 398.7 283 71.4
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 4.1e-106 389.0 337 56.7
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 4.1e-106 389.0 305 61.6
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.5e-105 387.1 234 75.6
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 5.0e-104 382.1 254 75.2
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.6e-102 377.1 378 54.0
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 1.7e-96 357.1 237 79.3
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.6e-92 343.2 198 83.3
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 3.4e-92 342.8 201 81.1
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 4.4e-92 342.4 234 70.5
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 3.2e-87 326.2 226 73.0
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 4.4e-76 289.3 220 69.1
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 5.4e-74 282.3 354 46.9
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 3.9e-72 276.2 344 44.5
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-70 271.2 219 63.9
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 2.3e-69 266.9 295 47.5
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 4.4e-68 262.7 310 44.5
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 3.7e-67 259.6 320 44.7
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 8.9e-53 211.8 152 71.7
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.2e-49 201.4 123 76.4
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 8.1e-46 188.7 182 60.4
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.9e-43 180.3 289 39.8
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 2.4e-37 160.6 94 86.2
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.4e-37 160.6 131 66.4
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 4.0e-37 159.8 92 87.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-36 157.5 131 65.6
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.0e-36 157.5 94 84.0
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 4.4e-36 156.4 92 84.8
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.7e-35 154.5 131 64.1
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 4.3e-31 139.8 97 76.3
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 2.4e-29 134.0 76 80.3
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 4.0e-29 133.3 66 93.9
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 3.2e-26 123.6 74 77.0
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.6e-25 121.3 63 85.7
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 3.9e-24 116.7 133 51.9
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 6.7e-24 115.9 116 55.2
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.5e-23 114.8 92 69.6
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 5.6e-23 112.8 319 26.6
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.3e-16 91.7 51 82.4
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 3.9e-16 90.1 100 52.0
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 4.3e-15 86.7 61 67.2
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 6.2e-14 82.8 247 29.6
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 3.1e-13 80.5 47 80.9
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 4.5e-12 76.6 41 85.4
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 5.0e-11 73.2 44 72.7
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 9.3e-10 68.9 42 73.8
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 9.3e-10 68.9 42 73.8
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.0e-08 63.9 33 93.9
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 8.2e-06 55.8 58 41.4


User provided reference genes

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