Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G943.43 Capsicum annuum HOM05D000932 ORTHO05D000729 2.8e-98 362.1 197 100.0
PGSC0003DMG400022124 Solanum tuberosum HOM05D000932 ORTHO05D000729 3.2e-46 189.1 216 55.1
Sopen07g034670 Solanum pennellii HOM05D000932 ORTHO05D000729 2.7e-37 159.5 214 53.3
Solyc07g066510.4 Solanum lycopersicum HOM05D000932 ORTHO05D000729 4.6e-37 158.7 214 50.5
Peaxi162Scf00452g00622 Petunia axillaris HOM05D000932 ORTHO05D000729 1.1e-22 110.9 200 47.0
Nitab4.5_0002633g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 1.5e-19 100.5 219 39.3
Sed0004309 Sechium edule HOM05D000932 ORTHO05D000729 5.0e-15 85.5 94 53.2
Dinv19607 Davidia involucrata HOM05D000932 ORTHO05D000729 1.9e-14 83.6 93 52.7
GSVIVG01020352001 Vitis vinifera HOM05D000932 ORTHO05D000729 9.4e-14 81.3 91 51.6
Glyma.08G168900 Glycine max HOM05D000932 ORTHO05D000729 3.9e-12 75.9 92 46.7
AL3G24560 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 8.8e-12 74.7 86 47.7
BcaB04g18734 Brassica carinata HOM05D000932 ORTHO05D000729 8.8e-12 74.7 91 47.3
DCAR_013732 Daucus carota HOM05D000932 ORTHO05D000729 8.8e-12 74.7 157 40.8
AT3G12890 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 1.1e-11 74.3 86 47.7
Nitab4.5_0002321g0050 Nicotiana tabacum HOM05D000932 ORTHO05D000729 1.1e-11 74.3 102 50.0
Thecc.07G160100 Theobroma cacao HOM05D000932 ORTHO05D000729 1.1e-11 74.3 93 49.5
Ca_03657_v3 Cicer arietinum L. HOM05D000932 ORTHO05D000729 1.5e-11 73.9 94 45.7
Ciclev10005692m.g Citrus clementina HOM05D000932 ORTHO05D000729 1.5e-11 73.9 93 51.6
Manes.06G173600 Manihot esculenta HOM05D000932 ORTHO05D000729 1.5e-11 73.9 92 47.8
SalBow8G4218 Salvia bowleyana HOM05D000932 ORTHO05D000729 3.3e-11 72.8 92 47.8
Cpa.g.sc331.5 Carica papaya HOM05D000932 ORTHO05D000729 4.4e-11 72.4 157 35.0
Atru.chr1.187 Acer truncatum HOM05D000932 ORTHO05D000729 5.7e-11 72.0 93 47.3
Manes.14G012100 Manihot esculenta HOM05D000932 ORTHO05D000729 7.4e-11 71.6 159 36.5
TPR.G33849 Trifolium pratense HOM05D000932 ORTHO05D000729 7.4e-11 71.6 94 47.9
VMungo1080G1674 Vigna mungo HOM05D000932 ORTHO05D000729 7.4e-11 71.6 92 45.7
Actinidia12780 Actinidia chinensis HOM05D000932 ORTHO05D000729 9.7e-11 71.2 93 46.2
BcaC09g48274 Brassica carinata HOM05D000932 ORTHO05D000729 9.7e-11 71.2 86 48.8
Lj3g0007504 Lotus japonicus HOM05D000932 ORTHO05D000729 9.7e-11 71.2 94 47.9
Lalb_Chr25g0284851 Lupinus albus HOM05D000932 ORTHO05D000729 1.3e-10 70.9 92 43.5
Oeu036614.1 Olea europaea HOM05D000932 ORTHO05D000729 1.3e-10 70.9 94 50.0
Oeu051670.1 Olea europaea HOM05D000932 ORTHO05D000729 1.7e-10 70.5 81 53.1
QL04p077060 Quercus lobata HOM05D000932 ORTHO05D000729 2.2e-10 70.1 92 46.7
BcaC09g48275 Brassica carinata HOM05D000932 ORTHO05D000729 2.8e-10 69.7 86 48.8
BolC1t05165H Brassica oleracea HOM05D000932 ORTHO05D000729 2.8e-10 69.7 86 48.8
Dinv42503 Davidia involucrata HOM05D000932 ORTHO05D000729 2.8e-10 69.7 89 49.4
Duzib213G0490 Durio zibethinus HOM05D000932 ORTHO05D000729 2.8e-10 69.7 92 47.8
Medtr2g068730 Medicago truncatula HOM05D000932 ORTHO05D000729 2.8e-10 69.7 95 45.3
Phvul.005G049801 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 2.8e-10 69.7 92 44.6
Prupe.4G138100 Prunus persica HOM05D000932 ORTHO05D000729 2.8e-10 69.7 87 47.1
Sabra05G0080000 Salix brachista HOM05D000932 ORTHO05D000729 2.8e-10 69.7 96 43.8
Duzib187G0060 Durio zibethinus HOM05D000932 ORTHO05D000729 3.7e-10 69.3 92 45.7
Psat1g004200 Pisum sativum HOM05D000932 ORTHO05D000729 3.7e-10 69.3 93 44.1
PGR083G2114 Punica granatum HOM05D000932 ORTHO05D000729 3.7e-10 69.3 95 42.1
Sp3g11030 Schrenkiella parvula HOM05D000932 ORTHO05D000729 3.7e-10 69.3 86 47.7
Gohir.A04G051500 Gossypium hirsutum HOM05D000932 ORTHO05D000729 4.8e-10 68.9 93 46.2
Gorai.009G353200 Gossypium raimondii HOM05D000932 ORTHO05D000729 4.8e-10 68.9 93 46.2
TWI39G0598 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 4.8e-10 68.9 93 43.0
Aqoxy3G01009 Aquilegia oxysepala HOM05D000932 ORTHO05D000729 6.3e-10 68.6 89 41.6
CARHR087410 Cardamine hirsuta HOM05D000932 ORTHO05D000729 6.3e-10 68.6 86 47.7
Glyma.15G258200 Glycine max HOM05D000932 ORTHO05D000729 8.2e-10 68.2 92 43.5
MELO3C019654.2 Cucumis melo HOM05D000932 ORTHO05D000729 1.1e-09 67.8 96 43.8
BcaC01g04040 Brassica carinata HOM05D000932 ORTHO05D000729 1.4e-09 67.4 91 45.1
C01p52260 Brassica napus HOM05D000932 ORTHO05D000729 1.4e-09 67.4 86 48.8
C03p45910 Brassica napus HOM05D000932 ORTHO05D000729 1.4e-09 67.4 91 45.1
BolC3t16868H Brassica oleracea HOM05D000932 ORTHO05D000729 1.4e-09 67.4 91 45.1
Carub.0003s1225 Capsella rubella HOM05D000932 ORTHO05D000729 2.4e-09 66.6 87 44.8
Gohir.D05G329800 Gossypium hirsutum HOM05D000932 ORTHO05D000729 2.4e-09 66.6 93 45.2
A05p36610 Brassica napus HOM05D000932 ORTHO05D000729 4.1e-09 65.9 86 45.3
Potri.007G066800 Populus trichocarpa HOM05D000932 ORTHO05D000729 4.1e-09 65.9 100 42.0
BcaC05g29229 Brassica carinata HOM05D000932 ORTHO05D000729 5.3e-09 65.5 86 45.3
C05p55040 Brassica napus HOM05D000932 ORTHO05D000729 5.3e-09 65.5 86 45.3
BolC5t34172H Brassica oleracea HOM05D000932 ORTHO05D000729 5.3e-09 65.5 86 45.3
BraA05t22462Z Brassica rapa HOM05D000932 ORTHO05D000729 5.3e-09 65.5 86 45.3
MD05G1222200 Malus domestica HOM05D000932 ORTHO05D000729 5.3e-09 65.5 95 42.1
COL.COLO4_38372 Corchorus olitorius HOM05D000932 ORTHO05D000729 7.0e-09 65.1 95 44.2
MELO3C012623.2 Cucumis melo HOM05D000932 ORTHO05D000729 7.0e-09 65.1 98 43.9
Gohir.D01G079800 Gossypium hirsutum HOM05D000932 ORTHO05D000729 7.0e-09 65.1 95 45.3
Gorai.002G104600 Gossypium raimondii HOM05D000932 ORTHO05D000729 7.0e-09 65.1 95 45.3
Eucgr.F01466 Eucalyptus grandis HOM05D000932 ORTHO05D000729 9.1e-09 64.7 100 39.0
Sabra07G0053400 Salix brachista HOM05D000932 ORTHO05D000729 9.1e-09 64.7 108 40.7
THA.LOC104822755 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 9.1e-09 64.7 93 44.1
arahy.Tifrunner.gnm1.ann1.UNUG60 Arachis hypogaea HOM05D000932 ORTHO05D000729 1.6e-08 63.9 97 42.3
Thhalv10022310m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 1.6e-08 63.9 86 46.5
arahy.Tifrunner.gnm1.ann1.9Y5DYJ Arachis hypogaea HOM05D000932 ORTHO05D000729 2.0e-08 63.5 98 41.8
BcaB04g21043 Brassica carinata HOM05D000932 ORTHO05D000729 2.0e-08 63.5 86 46.5
A01p40650 Brassica napus HOM05D000932 ORTHO05D000729 2.0e-08 63.5 86 44.2
BraA01t04099Z Brassica rapa HOM05D000932 ORTHO05D000729 2.0e-08 63.5 86 44.2
CSS0008478 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 2.0e-08 63.5 95 45.3
Cfa019414 Carpinus fangiana HOM05D000932 ORTHO05D000729 2.6e-08 63.2 108 40.7
CiPaw.11G062200 Carya illinoinensis HOM05D000932 ORTHO05D000729 2.6e-08 63.2 96 41.7
THA.LOC104810263 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 2.6e-08 63.2 95 42.1
CsaV3_7G022750 Cucumis sativus L. HOM05D000932 ORTHO05D000729 3.5e-08 62.8 98 46.9
BcaB06g25503 Brassica carinata HOM05D000932 ORTHO05D000729 4.5e-08 62.4 86 46.5
SGA_v2.0_scaffold7G03595 Striga asiatica HOM05D000932 ORTHO05D000729 4.5e-08 62.4 92 50.0
ClCG02G018550 Citrullus lanatus HOM05D000932 ORTHO05D000729 7.7e-08 61.6 110 40.9
Sed0011603 Sechium edule HOM05D000932 ORTHO05D000729 7.7e-08 61.6 93 45.2
FAN16G2793 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.0e-07 61.2 105 40.0
Nn7g37950 Nelumbo nucifera HOM05D000932 ORTHO05D000729 1.0e-07 61.2 156 33.3
Potri.005G097700 Populus trichocarpa HOM05D000932 ORTHO05D000729 1.0e-07 61.2 140 32.9
TAR627G0514 Trochodendron aralioides HOM05D000932 ORTHO05D000729 1.0e-07 61.2 111 37.8
A03p37850 Brassica napus HOM05D000932 ORTHO05D000729 1.3e-07 60.8 94 40.4
BraA03t12940Z Brassica rapa HOM05D000932 ORTHO05D000729 1.3e-07 60.8 94 40.4
FvH4_3g15550 Fragaria vesca HOM05D000932 ORTHO05D000729 1.3e-07 60.8 105 40.0
FAN11G1453 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.3e-07 60.8 105 40.0
FAN21G0644 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.3e-07 60.8 106 40.6
FAN25G3067 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.3e-07 60.8 105 40.0
Gohir.A01G095600 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.3e-07 60.8 95 43.2
MSTRG.7065 Avicennia marina HOM05D000932 ORTHO05D000729 2.2e-07 60.1 94 39.4
Rhsim06G0240000 Rhododendron simsii HOM05D000932 ORTHO05D000729 2.2e-07 60.1 89 40.4
Cc05_g16220 Coffea canephora HOM05D000932 ORTHO05D000729 2.9e-07 59.7 152 34.9
RcHm_v2.0_Chr5g0026181 Rosa chinensis HOM05D000932 ORTHO05D000729 3.8e-07 59.3 106 40.6
vmacro11719 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 3.8e-07 59.3 95 40.0
Sed0021707 Sechium edule HOM05D000932 ORTHO05D000729 5.0e-07 58.9 128 32.0
MSTRG.14549 Avicennia marina HOM05D000932 ORTHO05D000729 8.5e-07 58.2 95 43.2
CSS0019563 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 8.5e-07 58.2 79 48.1
MD10G1203800 Malus domestica HOM05D000932 ORTHO05D000729 8.5e-07 58.2 158 31.0
CSS0007596 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 1.1e-06 57.8 65 50.8
Manes.06G173501 Manihot esculenta HOM05D000932 ORTHO05D000729 1.5e-06 57.4 90 41.1
PSO675G4516 Papaver somniferum HOM05D000932 ORTHO05D000729 2.5e-06 56.6 99 36.4
HanXRQChr11g0335061 Helianthus annuus HOM05D000932 ORTHO05D000729 4.2e-06 55.8 101 36.6
ClCG09G022600 Citrullus lanatus HOM05D000932 ORTHO05D000729 5.5e-06 55.5 61 49.2
CsaV3_6G013650 Cucumis sativus L. HOM05D000932 ORTHO05D000729 5.5e-06 55.5 84 45.2
Haze_07843 Corylus avellana HOM05D000932 ORTHO05D000729 7.2e-06 55.1 74 40.5


User provided reference genes

Program Settings