Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.8e-157 559.3 293 100.0
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 4.3e-132 474.9 297 85.5
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.3e-128 463.4 297 84.5
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 5.0e-112 408.3 290 77.2
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 4.5e-105 385.2 294 71.4
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.5e-103 380.2 293 70.6
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.5e-103 379.4 293 70.3
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 3.5e-97 359.0 298 68.1
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.3e-96 356.3 300 66.7
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.5e-95 353.6 296 66.2
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 7.2e-95 351.3 302 65.2
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.6e-94 350.1 296 66.6
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 6.1e-94 348.2 298 67.4
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 9.8e-92 340.9 231 77.5
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 3.7e-91 339.0 232 76.7
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 8.3e-91 337.8 228 77.6
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.8e-90 336.7 231 75.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.1e-90 335.9 228 77.6
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.2e-89 334.0 231 75.8
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.6e-89 333.6 228 76.8
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.0e-89 333.2 234 74.8
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.5e-89 332.4 220 78.2
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.9e-89 331.6 228 75.0
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 5.9e-89 331.6 221 78.3
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.3e-88 330.5 243 71.2
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.7e-88 330.1 234 73.9
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.9e-88 329.3 231 75.3
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 5.0e-88 328.6 307 59.9
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.6e-88 328.2 243 72.0
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.6e-88 328.2 221 78.3
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 6.6e-88 328.2 221 79.2
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.1e-87 327.4 221 77.8
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.1e-87 327.4 221 77.8
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.5e-87 327.0 221 76.9
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.9e-87 326.6 230 75.2
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.9e-87 326.6 296 63.5
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 2.5e-87 326.2 228 74.6
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 5.6e-87 325.1 230 74.8
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 7.3e-87 324.7 244 71.7
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 9.5e-87 324.3 231 74.0
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.1e-86 323.2 230 73.9
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.1e-86 323.2 230 73.9
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 2.1e-86 323.2 229 73.8
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 3.6e-86 322.4 275 63.6
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 3.6e-86 322.4 215 78.1
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.6e-86 322.4 228 75.0
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 4.7e-86 322.0 225 73.3
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 4.7e-86 322.0 231 74.0
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 4.7e-86 322.0 221 77.4
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 4.7e-86 322.0 231 72.7
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 6.1e-86 321.6 235 71.1
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 6.1e-86 321.6 235 71.9
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.0e-85 320.9 236 71.6
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 1.0e-85 320.9 231 72.7
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.0e-85 320.9 317 59.6
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.4e-85 320.5 223 75.3
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.4e-85 320.5 223 75.3
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.4e-85 320.5 215 76.3
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.4e-85 320.5 235 72.3
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.4e-85 320.5 304 62.2
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.4e-85 320.5 228 74.6
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.8e-85 320.1 231 73.2
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.8e-85 320.1 223 74.0
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.8e-85 320.1 271 64.9
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 2.3e-85 319.7 230 73.0
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.3e-85 319.7 237 72.6
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 3.1e-85 319.3 236 70.3
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 4.0e-85 318.9 243 70.8
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 4.0e-85 318.9 270 67.0
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 4.0e-85 318.9 232 72.0
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 4.0e-85 318.9 241 71.0
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 5.2e-85 318.5 223 76.2
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 5.2e-85 318.5 304 61.8
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 5.2e-85 318.5 260 66.2
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 6.8e-85 318.2 223 74.4
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 6.8e-85 318.2 223 74.4
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.8e-85 318.2 234 70.9
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 8.9e-85 317.8 231 72.3
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.5e-84 317.0 244 69.7
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 2.6e-84 316.2 242 71.1
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.6e-84 316.2 238 70.6
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 3.4e-84 315.8 235 71.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 4.4e-84 315.5 237 71.3
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.4e-84 315.5 224 72.8
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 5.8e-84 315.1 237 71.3
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 5.8e-84 315.1 224 75.0
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 5.8e-84 315.1 225 73.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 5.8e-84 315.1 227 71.8
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 7.5e-84 314.7 224 75.0
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 9.8e-84 314.3 224 75.0
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.3e-83 313.9 289 60.9
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.3e-83 313.9 234 71.4
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.7e-83 313.5 222 73.4
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.7e-83 313.5 305 59.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.7e-83 313.5 236 70.3
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 2.9e-83 312.8 309 58.6
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.7e-83 312.4 253 68.0
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 3.7e-83 312.4 296 61.5
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 8.3e-83 311.2 232 70.3
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 8.3e-83 311.2 263 64.3
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.1e-82 310.8 223 71.3
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.4e-82 310.5 235 69.8
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.9e-82 310.1 254 68.9
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.4e-82 309.7 222 73.9
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.2e-82 309.3 235 70.2
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.2e-82 307.8 230 70.4
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 9.2e-82 307.8 222 72.1
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.2e-81 307.4 317 60.3
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.7e-81 306.2 231 69.7
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.7e-81 306.2 230 70.0
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.7e-81 306.2 220 73.2
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 3.5e-81 305.8 235 70.6
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.0e-80 304.3 230 71.3
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 5.0e-80 302.0 224 73.2
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 2.0e-76 290.0 244 64.3
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 5.8e-76 288.5 235 66.0
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 7.5e-76 288.1 228 66.2
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 9.8e-76 287.7 223 70.0
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.9e-74 283.5 220 67.7
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.4e-74 282.0 220 68.6
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 6.0e-73 278.5 218 66.5
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 1.7e-72 276.9 234 64.1
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.1e-71 274.2 229 62.9
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.3e-71 272.7 229 63.8
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 5.6e-71 271.9 177 76.3
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.2e-68 264.2 177 79.7
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 5.1e-64 248.8 373 45.6
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.5e-63 247.3 222 61.7
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 7.3e-63 245.0 186 73.7
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 7.3e-63 245.0 190 70.5
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.9e-58 230.3 208 63.9
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.0e-56 224.6 225 56.4
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.0e-56 224.6 225 56.4
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 2.3e-56 223.4 161 73.9
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 3.9e-56 222.6 161 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 8.7e-56 221.5 186 65.1
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.9e-55 220.3 190 66.3
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.6e-55 218.0 176 68.2
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-54 216.5 173 68.2
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 5.3e-53 212.2 166 68.7
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.4e-52 209.5 220 55.9
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 7.6e-52 208.4 169 68.0
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.9e-50 203.8 235 50.2
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 7.1e-50 201.8 184 58.7
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 2.5e-47 193.4 185 55.7
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 9.9e-44 181.4 238 47.9
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 2.8e-38 163.3 155 56.8
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.1e-29 134.8 68 98.5
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.8e-28 129.0 246 38.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 1.3e-27 127.9 241 36.5
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 4.1e-21 106.3 207 35.7
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.1e-18 98.2 197 34.5
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 3.3e-15 86.7 235 31.5
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 4.3e-15 86.3 255 32.9
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-11 74.3 179 35.2
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 2.5e-10 70.5 77 55.8
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.2e-09 68.2 41 73.2
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.1e-09 67.4 58 60.3
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.1e-08 62.8 46 69.6
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.7e-06 57.8 41 65.9


User provided reference genes

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