Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G941.16 Capsicum annuum HOM05D006747 ORTHO05D008384 3.0e-142 508.4 251 100.0
Solyc06g008350.3 Solanum lycopersicum HOM05D006747 ORTHO05D008384 9.6e-104 380.6 209 91.4
Sopen06g003200 Solanum pennellii HOM05D006747 ORTHO05D008384 9.6e-104 380.6 209 91.4
PGSC0003DMG400025504 Solanum tuberosum HOM05D006747 ORTHO05D008384 2.4e-102 375.9 209 90.0
Peaxi162Scf00987g00036 Petunia axillaris HOM05D006747 ORTHO05D008384 3.2e-99 365.5 209 88.0
Dinv22393 Davidia involucrata HOM05D006747 ORTHO05D008384 2.2e-92 342.8 210 80.5
CSS0000886 Camellia sinensis var. sinensis HOM05D006747 ORTHO05D008384 4.9e-92 341.7 204 81.9
GSVIVG01028355001 Vitis vinifera HOM05D006747 ORTHO05D008384 1.2e-90 337.0 210 79.5
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.0e-89 334.0 216 77.3
Cc01_g18210 Coffea canephora HOM05D006747 ORTHO05D008384 3.0e-89 332.4 210 79.0
TAR362G0605 Trochodendron aralioides HOM05D006747 ORTHO05D008384 1.5e-88 330.1 212 77.4
Atru.chr5.1716 Acer truncatum HOM05D006747 ORTHO05D008384 1.9e-88 329.7 210 78.1
Ciclev10021655m.g Citrus clementina HOM05D006747 ORTHO05D008384 1.6e-87 326.6 203 79.3
Migut.D00438 Erythranthe guttata HOM05D006747 ORTHO05D008384 2.8e-87 325.9 210 75.7
Potri.005G225900 Populus trichocarpa HOM05D006747 ORTHO05D008384 2.8e-87 325.9 210 77.6
Cfa002442 Carpinus fangiana HOM05D006747 ORTHO05D008384 1.4e-86 323.6 210 74.8
Haze_24648 Corylus avellana HOM05D006747 ORTHO05D008384 1.8e-86 323.2 209 75.6
Rhsim13G0036000 Rhododendron simsii HOM05D006747 ORTHO05D008384 2.4e-86 322.8 211 75.8
Sc17g0000600 Simmondsia chinensis HOM05D006747 ORTHO05D008384 3.1e-86 322.4 209 76.1
CANSAT01G1212 Cannabis sativa HOM05D006747 ORTHO05D008384 4.0e-86 322.0 210 75.2
MSTRG.21486 Avicennia marina HOM05D006747 ORTHO05D008384 6.9e-86 321.2 205 79.0
Actinidia30159 Actinidia chinensis HOM05D006747 ORTHO05D008384 9.0e-86 320.9 202 78.7
Aqoxy2G03665 Aquilegia oxysepala HOM05D006747 ORTHO05D008384 9.0e-86 320.9 212 75.0
Duzib138G0743 Durio zibethinus HOM05D006747 ORTHO05D008384 1.2e-85 320.5 210 75.7
Sabra05G0174300 Salix brachista HOM05D006747 ORTHO05D008384 2.0e-85 319.7 210 78.1
Thecc.01G256100 Theobroma cacao HOM05D006747 ORTHO05D008384 2.0e-85 319.7 210 75.7
MBI07_g16913_MAGBIO Magnolia biondii HOM05D006747 ORTHO05D008384 5.8e-85 318.2 206 76.2
Manes.12G033600 Manihot esculenta HOM05D006747 ORTHO05D008384 3.8e-84 315.5 210 75.7
MD05G1195200 Malus domestica HOM05D006747 ORTHO05D008384 4.9e-84 315.1 210 73.3
DCAR_012556 Daucus carota HOM05D006747 ORTHO05D008384 8.4e-84 314.3 210 71.0
Gohir.D11G137550 Gossypium hirsutum HOM05D006747 ORTHO05D008384 8.4e-84 314.3 202 76.2
Gorai.007G147500 Gossypium raimondii HOM05D006747 ORTHO05D008384 8.4e-84 314.3 203 76.4
SalBow4G0984 Salvia bowleyana HOM05D006747 ORTHO05D008384 1.4e-83 313.5 210 73.8
AUR62011854 Chenopodium quinoa HOM05D006747 ORTHO05D008384 1.9e-83 313.2 205 73.7
Gohir.A11G131500 Gossypium hirsutum HOM05D006747 ORTHO05D008384 3.2e-83 312.4 203 76.4
HanXRQChr09g0254271 Helianthus annuus HOM05D006747 ORTHO05D008384 4.2e-83 312.0 203 77.3
Lsat_1_v5_gn_5_182940 Lactuca sativa HOM05D006747 ORTHO05D008384 5.4e-83 311.6 202 75.2
PGR031G3840 Punica granatum HOM05D006747 ORTHO05D008384 5.4e-83 311.6 210 72.4
RcHm_v2.0_Chr6g0287851 Rosa chinensis HOM05D006747 ORTHO05D008384 5.4e-83 311.6 208 75.0
EL10As5g23483 Beta vulgaris HOM05D006747 ORTHO05D008384 1.6e-82 310.1 205 71.7
Eucgr.B01566 Eucalyptus grandis HOM05D006747 ORTHO05D008384 1.6e-82 310.1 210 71.9
FAN15G1911 Fragaria x ananassa HOM05D006747 ORTHO05D008384 2.7e-82 309.3 208 74.0
FAN20G2892 Fragaria x ananassa HOM05D006747 ORTHO05D008384 3.5e-82 308.9 208 73.6
FAN27G0389 Fragaria x ananassa HOM05D006747 ORTHO05D008384 1.8e-81 306.6 208 73.1
Lalb_Chr06g0170541 Lupinus albus HOM05D006747 ORTHO05D008384 1.8e-81 306.6 203 73.4
Lj5g0027576 Lotus japonicus HOM05D006747 ORTHO05D008384 2.3e-81 306.2 206 74.3
AUR62024699 Chenopodium quinoa HOM05D006747 ORTHO05D008384 3.9e-81 305.4 202 71.3
Phvul.007G192000 Phaseolus vulgaris HOM05D006747 ORTHO05D008384 1.1e-80 303.9 203 74.4
ATR0736G001 Amborella trichopoda HOM05D006747 ORTHO05D008384 1.5e-80 303.5 209 70.8
Glyma.06G315300 Glycine max HOM05D006747 ORTHO05D008384 1.9e-80 303.1 201 73.6
Nitab4.5_0005593g0070 Nicotiana tabacum HOM05D006747 ORTHO05D008384 1.9e-80 303.1 208 77.9
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 3.3e-80 302.4 211 69.7
Medtr1g069790 Medicago truncatula HOM05D006747 ORTHO05D008384 3.3e-80 302.4 209 70.3
Psat6g054040 Pisum sativum HOM05D006747 ORTHO05D008384 3.3e-80 302.4 204 72.1
TPR.G35130 Trifolium pratense HOM05D006747 ORTHO05D008384 3.3e-80 302.4 202 72.8
PSO063G2179 Papaver somniferum HOM05D006747 ORTHO05D008384 4.3e-80 302.0 210 70.5
CiPaw.03G265900 Carya illinoinensis HOM05D006747 ORTHO05D008384 5.6e-80 301.6 224 68.8
Thhalv10002060m.g Eutrema salsugineum HOM05D006747 ORTHO05D008384 5.6e-80 301.6 210 69.0
VMungo0720G1324 Vigna mungo HOM05D006747 ORTHO05D008384 5.6e-80 301.6 203 72.4
SGA_v2.0_scaffold138G35213 Striga asiatica HOM05D006747 ORTHO05D008384 7.4e-80 301.2 227 67.4
arahy.Tifrunner.gnm1.ann1.EQ4JVG Arachis hypogaea HOM05D006747 ORTHO05D008384 1.3e-79 300.4 206 71.4
Sp3g33710 Schrenkiella parvula HOM05D006747 ORTHO05D008384 1.6e-79 300.1 210 68.1
arahy.Tifrunner.gnm1.ann1.0525TE Arachis hypogaea HOM05D006747 ORTHO05D008384 2.8e-79 299.3 206 70.9
AL3G53500 Arabidopsis lyrata HOM05D006747 ORTHO05D008384 6.2e-79 298.1 200 72.5
BraA07t27816Z Brassica rapa HOM05D006747 ORTHO05D008384 8.1e-79 297.7 210 68.1
CsaV3_7G027040 Cucumis sativus L. HOM05D006747 ORTHO05D008384 8.1e-79 297.7 203 71.9
vmacro02672 Vaccinium macrocarpon HOM05D006747 ORTHO05D008384 1.1e-78 297.4 260 60.4
CARHR111050 Cardamine hirsuta HOM05D006747 ORTHO05D008384 1.4e-78 297.0 200 71.5
Carub.0003s3494 Capsella rubella HOM05D006747 ORTHO05D008384 1.8e-78 296.6 200 71.5
HPP92_014756 Vanilla planifolia HOM05D006747 ORTHO05D008384 3.1e-78 295.8 211 68.7
AT2G20495 Arabidopsis thaliana HOM05D006747 ORTHO05D008384 4.0e-78 295.4 200 72.0
BcaC06g36739 Brassica carinata HOM05D006747 ORTHO05D008384 6.9e-78 294.7 210 67.1
THA.LOC104804045 Tarenaya hassleriana HOM05D006747 ORTHO05D008384 1.2e-77 293.9 218 68.3
COL.COLO4_04026 Corchorus olitorius HOM05D006747 ORTHO05D008384 2.6e-77 292.7 236 64.0
C07p00520 Brassica napus HOM05D006747 ORTHO05D008384 3.4e-77 292.4 210 66.7
MELO3C012750.2 Cucumis melo HOM05D006747 ORTHO05D008384 4.5e-77 292.0 203 70.4
BolC7t40498H Brassica oleracea HOM05D006747 ORTHO05D008384 1.7e-76 290.0 211 66.8
BcaB03g16845 Brassica carinata HOM05D006747 ORTHO05D008384 6.5e-76 288.1 208 65.9
Os07g0458800 Oryza sativa ssp. japonica HOM05D006747 ORTHO05D008384 9.3e-75 284.3 212 65.1
CDE06G1525 Ceratophyllum demersum HOM05D006747 ORTHO05D008384 1.6e-74 283.5 210 66.2
unitig_8.g3882 Utricularia gibba HOM05D006747 ORTHO05D008384 4.6e-74 282.0 202 68.3
Hma1.2p1_0273F.1_g109550 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 1.3e-73 280.4 165 83.6
Zm00001eb384950 Zea mays HOM05D006747 ORTHO05D008384 4.8e-71 271.9 212 63.7
Prupe.8G221800 Prunus persica HOM05D006747 ORTHO05D008384 1.5e-69 266.9 192 69.8
Nn1g02801 Nelumbo nucifera HOM05D006747 ORTHO05D008384 1.0e-68 264.2 213 64.8
FAN24G2059 Fragaria x ananassa HOM05D006747 ORTHO05D008384 8.4e-68 261.2 208 64.9
ECA248G1486 Erigeron canadensis HOM05D006747 ORTHO05D008384 2.8e-63 246.1 203 64.5
A07p00240 Brassica napus HOM05D006747 ORTHO05D008384 3.1e-62 242.7 210 59.0
Oeu035736.1 Olea europaea HOM05D006747 ORTHO05D008384 2.6e-61 239.6 149 77.2
AagrBONN_evm.TU.Sc2ySwM_228.388 Anthoceros agrestis HOM05D006747 ORTHO05D008384 6.5e-60 235.0 201 56.2
Nitab4.5_0000326g0130 Nicotiana tabacum HOM05D006747 ORTHO05D008384 5.5e-59 231.9 209 65.1
PSO017G5775 Papaver somniferum HOM05D006747 ORTHO05D008384 5.5e-59 231.9 210 59.0
Pp3c11_10320 Physcomitrium patens HOM05D006747 ORTHO05D008384 2.1e-58 229.9 205 55.6
ClCG09G008030 Citrullus lanatus HOM05D006747 ORTHO05D008384 2.7e-58 229.6 373 39.1
Mapoly0024s0028 Marchantia polymorpha HOM05D006747 ORTHO05D008384 1.0e-57 227.6 201 56.7
HPP92_028089 Vanilla planifolia HOM05D006747 ORTHO05D008384 5.9e-53 211.8 149 69.8
SMO115G0001 Selaginella moellendorffii HOM05D006747 ORTHO05D008384 2.8e-47 193.0 201 50.7
QL09p039580 Quercus lobata HOM05D006747 ORTHO05D008384 3.8e-44 182.6 129 73.6
Sed0026822 Sechium edule HOM05D006747 ORTHO05D008384 5.9e-37 158.7 128 63.3
QL09p039572 Quercus lobata HOM05D006747 ORTHO05D008384 1.4e-33 147.5 88 78.4
Ca_09674_v3 Cicer arietinum L. HOM05D006747 ORTHO05D008384 8.3e-31 138.3 116 60.3
FvH4_2g21270 Fragaria vesca HOM05D006747 ORTHO05D008384 4.1e-30 136.0 99 67.7
CAN.G507.4 Capsicum annuum HOM05D006747 ORTHO05D008384 5.9e-29 132.1 72 88.9
SEGI_35883 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 1.1e-27 127.9 86 67.4
Hma1.2p1_0273F.1_g109560 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 5.4e-22 109.0 73 71.2
SEGI_30594 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 7.3e-19 98.6 96 47.9
arahy.Tifrunner.gnm1.ann1.K1LLW7 Arachis hypogaea HOM05D006747 ORTHO05D008384 9.5e-19 98.2 58 82.8
Actinidia34415 Actinidia chinensis HOM05D006747 ORTHO05D008384 1.0e-12 78.2 56 62.5
Duzib133G0415 Durio zibethinus HOM05D006747 ORTHO05D008384 2.3e-12 77.0 49 73.5
Actinidia34401 Actinidia chinensis HOM05D006747 ORTHO05D008384 1.9e-11 73.9 53 62.3
MD10G1182200 Malus domestica HOM05D006747 ORTHO05D008384 7.3e-11 72.0 60 63.3
CAN.G1711.17 Capsicum annuum HOM05D000610 ORTHO05D002583 5.2e-09 65.9 44 63.6
Cre07.g348951 Chlamydomonas reinhardtii HOM05D006747 ORTHO05D008384 1.2e-08 64.7 106 34.9
CAN.G2816.1 Capsicum annuum HOM05D000346 ORTHO05D011742 2.6e-08 63.5 58 53.4
Gohir.A07G149550 Gossypium hirsutum HOM05D006747 ORTHO05D008384 3.7e-07 59.7 68 52.9
Gohir.A07G213740 Gossypium hirsutum HOM05D006747 ORTHO05D008384 3.7e-07 59.7 76 43.4


User provided reference genes

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