Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-97 359.8 177 100.0
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-97 359.8 177 100.0
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-97 359.8 177 100.0
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-97 359.8 177 100.0
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 1.2e-97 359.8 177 100.0
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 6.1e-97 357.5 177 99.4
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 5.9e-92 340.9 173 96.0
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 8.0e-89 330.5 163 100.0
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 8.0e-89 330.5 163 100.0
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 1.4e-88 329.7 177 93.2
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.5e-82 309.7 179 87.2
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 3.6e-81 305.1 177 87.6
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 7.0e-77 290.8 179 81.6
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.0e-75 287.0 188 78.7
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.0e-75 287.0 179 79.3
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-75 284.6 189 78.3
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-75 284.6 189 78.3
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-75 284.6 189 78.3
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-75 284.6 189 78.3
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 4.0e-72 275.0 177 75.7
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.5e-71 273.1 179 78.2
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.5e-71 273.1 179 78.2
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.4e-71 271.9 179 77.7
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.4e-71 271.9 179 77.7
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.4e-70 267.7 176 76.7
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-68 263.5 187 70.6
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-68 263.5 187 70.6
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-68 263.5 187 70.6
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-68 263.5 187 70.6
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-68 262.7 187 70.6
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-68 262.7 187 70.6
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-68 262.7 187 70.6
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-68 262.7 187 70.6
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-68 262.7 187 70.6
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-68 262.7 187 70.6
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 2.0e-68 262.7 187 70.6
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 2.0e-68 262.7 175 75.4
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 2.7e-68 262.3 187 70.6
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 2.7e-68 262.3 187 70.6
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 7.8e-68 260.8 185 73.0
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 7.8e-68 260.8 185 73.0
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 7.8e-68 260.8 185 71.9
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 7.8e-68 260.8 181 72.9
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 1.3e-67 260.0 187 70.1
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 5.0e-67 258.1 177 71.2
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 6.6e-67 257.7 187 69.5
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 1.4e-64 250.0 185 69.7
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 6.8e-64 247.7 189 70.4
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 6.8e-64 247.7 189 70.4
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-61 240.4 188 67.6
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 5.6e-58 228.0 173 67.6
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 5.6e-58 228.0 156 71.2
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.5e-55 219.9 179 64.2
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 1.9e-53 213.0 177 64.4
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.1e-53 211.8 112 87.5
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 1.6e-52 209.9 162 66.7
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.7e-51 206.5 132 78.8
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.3e-50 201.8 104 88.5
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.6e-49 198.7 142 73.2
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 3.6e-49 198.7 127 72.4
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 3.6e-49 198.7 110 82.7
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-48 196.8 105 84.8
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-48 196.8 105 84.8
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-48 196.8 105 84.8
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-48 196.8 105 84.8
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.4e-48 196.8 105 84.8
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 5.2e-48 194.9 177 60.5
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.0e-47 193.0 120 74.2
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 3.4e-47 192.2 170 61.2
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.8e-46 188.7 103 83.5
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 6.4e-46 188.0 134 75.4
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-45 187.2 103 83.5
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.4e-45 186.0 90 94.4
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.4e-45 186.0 90 94.4
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 3.2e-45 185.7 181 60.8
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.6e-44 181.8 136 69.9
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.5e-42 176.8 125 72.0
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.5e-42 176.8 171 55.0
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 5.6e-42 174.9 121 72.7
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 7.3e-42 174.5 161 55.3
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-36 156.8 79 87.3
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 2.1e-36 156.4 81 98.8
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 6.0e-36 154.8 76 88.2
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 7.9e-36 154.5 151 55.6
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.3e-35 153.7 127 63.8
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.9e-34 149.8 76 86.8
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 4.3e-34 148.7 77 85.7
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 9.6e-34 147.5 188 43.1
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 4.8e-33 145.2 77 83.1
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 6.2e-33 144.8 115 73.0
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 1.8e-32 143.3 142 57.7
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 9.0e-32 141.0 70 88.6
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 2.6e-31 139.4 131 63.4
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.9e-30 136.0 69 87.0
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 8.4e-30 134.4 67 94.0
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 8.4e-30 134.4 101 57.4
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.6e-28 130.2 68 86.8
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 2.1e-28 129.8 179 46.4
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 2.7e-28 129.4 83 72.3
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.9e-26 123.2 69 82.6
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 7.4e-26 121.3 114 57.9
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.8e-25 119.4 69 79.7
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 3.4e-23 112.5 324 27.2
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.2e-21 105.9 54 83.3
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 1.6e-20 103.6 62 87.1
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.1e-20 103.2 54 81.5
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.5e-20 102.4 50 90.0
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 6.0e-20 101.7 53 90.6
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.8e-19 100.1 53 83.0
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 2.1e-17 93.2 44 86.4
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.8e-17 92.0 55 74.5
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.1e-16 89.0 112 47.3
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 1.7e-14 83.6 83 57.8
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.9e-13 80.1 60 68.3
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.2e-12 77.4 44 95.5
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 4.3e-10 68.9 50 82.0
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.8e-09 66.2 93 51.6
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 3.7e-09 65.9 85 57.6
Nitab4.5_0007979g0090 Nicotiana tabacum HOM05D005034 ORTHO05D006234 8.2e-09 64.7 108 42.6
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 5.3e-08 62.0 39 82.1
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.5e-07 60.5 30 96.7
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 5.9e-07 58.5 70 55.7
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.2e-06 56.6 88 46.6
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.8e-06 55.8 30 100.0
Psat5g168080 Pisum sativum HOM05D005034 ORTHO05D006234 5.0e-06 55.5 23 91.3


User provided reference genes

Program Settings