Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 2.5e-292 1008.1 510 100.0
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 6.2e-267 923.7 510 91.6
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-232 807.0 510 83.1
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-232 807.0 510 83.1
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-232 807.0 510 83.1
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-232 807.0 510 83.1
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.4e-232 807.0 510 83.1
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 4.8e-219 764.6 510 79.2
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 4.6e-206 721.5 510 74.7
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.0e-200 703.7 511 71.8
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 1.6e-198 696.4 507 71.2
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 3.9e-197 691.8 513 72.5
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.5e-196 689.9 510 71.8
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-193 679.9 511 70.8
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 5.9e-193 677.9 507 71.6
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 5.9e-193 677.9 507 71.6
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 1.4e-191 673.3 511 69.7
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-190 667.9 511 70.5
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 2.0e-188 662.9 514 67.3
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.4e-188 661.0 511 70.1
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-187 659.4 511 69.9
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.2e-185 653.7 508 67.3
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.0e-185 652.9 511 69.5
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 1.0e-181 640.6 515 68.2
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 1.3e-179 633.6 505 68.9
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 2.4e-178 629.4 508 67.9
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.3e-178 628.2 511 67.3
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-176 622.9 511 67.1
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.9e-176 622.5 511 66.3
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 7.5e-172 607.8 509 64.4
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.4e-170 603.6 510 64.9
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 1.1e-167 594.0 447 71.6
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-167 594.0 511 65.0
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 1.5e-167 593.6 513 61.4
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 2.8e-166 589.3 513 61.0
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 4.7e-166 588.6 513 61.0
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 1.4e-165 587.0 513 61.2
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.0e-165 585.9 457 68.9
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 2.8e-163 579.3 510 63.1
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.1e-162 577.4 441 68.5
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 2.7e-161 572.8 509 63.1
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 5.0e-160 568.5 509 61.9
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.5e-159 567.0 299 94.3
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 3.6e-158 562.4 517 64.2
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 1.8e-157 560.1 507 62.3
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.8e-157 558.1 514 63.0
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 8.9e-157 557.8 514 61.1
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.1e-151 540.8 424 68.4
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.3e-151 538.9 426 68.1
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.3e-151 538.1 406 71.2
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 4.4e-148 528.9 513 57.7
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 5.4e-146 521.9 473 60.3
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 7.0e-146 521.5 514 57.6
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 5.4e-138 495.4 359 76.0
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 6.6e-136 488.4 338 74.9
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 5.2e-133 478.8 487 56.9
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 1.7e-120 437.2 398 61.8
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 5.6e-119 432.2 396 59.3
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 7.3e-119 431.8 233 91.8
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.4e-117 426.8 512 52.7
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 2.8e-110 403.3 280 77.9
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.0e-108 397.1 453 52.5
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 3.2e-106 389.8 468 49.6
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.8e-102 376.7 426 52.3
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-99 367.5 331 61.9
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.5e-98 363.6 507 46.0
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.0e-96 356.7 292 67.8
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 3.7e-94 349.7 311 62.4
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.2e-84 318.2 159 100.0
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.4e-82 311.2 170 92.4
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.7e-78 297.7 159 94.3
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 6.5e-75 285.8 471 43.9
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 1.1e-74 285.0 145 97.9
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 5.7e-71 272.7 279 55.6
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 5.7e-71 272.7 279 55.6
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-69 267.3 213 62.4
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-69 267.3 213 62.4
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-69 267.3 213 62.4
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-69 267.3 213 62.4
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 2.4e-69 267.3 213 62.4
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.1e-69 266.5 269 57.2
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 3.5e-68 263.5 508 40.6
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.8e-67 260.0 304 52.6
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.5e-66 258.1 181 72.4
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 3.5e-60 236.9 221 60.6
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 1.7e-59 234.6 122 95.9
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 7.2e-58 229.2 325 44.0
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 3.6e-57 226.9 212 59.9
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 2.8e-54 217.2 144 73.6
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.0e-51 208.8 113 92.0
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.6e-51 205.7 120 87.5
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.9e-50 204.5 148 70.3
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 2.5e-50 204.1 130 80.8
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 3.6e-49 200.3 149 71.1
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.0e-48 198.7 119 84.9
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 8.3e-46 189.1 236 46.6
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 7.3e-42 176.0 98 89.8
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 3.6e-41 173.7 85 98.8
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 4.0e-40 170.2 164 58.5
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 5.2e-40 169.9 143 65.7
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 2.0e-39 167.9 120 70.0
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.4e-39 166.8 191 48.2
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 1.3e-38 165.2 119 73.9
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 4.9e-38 163.3 121 69.4
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.2e-37 160.6 139 64.0
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 3.5e-36 157.1 136 58.8
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.3e-35 154.5 136 63.2
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 5.0e-35 153.3 134 61.9
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 8.6e-35 152.5 136 64.0
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.0e-33 146.0 135 63.0
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 6.8e-32 142.9 142 57.7
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.5e-31 141.7 148 56.8
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 2.4e-29 134.4 102 63.7
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.1e-29 133.7 108 63.0
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 1.6e-28 131.7 106 63.2
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 7.8e-28 129.4 74 81.1
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 8.6e-27 125.9 105 61.0
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.5e-26 125.2 122 58.2
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.6e-26 123.2 83 77.1
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 9.5e-26 122.5 80 72.5
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 5.2e-24 116.7 116 51.7
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.5e-23 115.2 409 28.1
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.5e-23 112.8 78 71.8
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.9e-22 110.9 160 44.4
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 2.7e-20 104.4 120 49.2
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 7.8e-20 102.8 77 72.7
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 7.8e-20 102.8 405 28.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.3e-18 96.3 115 46.1
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.8e-16 91.7 65 67.7
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.8e-16 91.7 83 60.2
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 6.8e-16 89.7 67 70.1
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.4e-15 87.4 94 57.4
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 4.4e-15 87.0 84 54.8
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 7.6e-15 86.3 83 56.6
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 7.6e-15 86.3 95 54.7
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 6.4e-14 83.2 48 81.2
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 6.4e-14 83.2 59 72.9
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.7e-11 75.1 53 62.3
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 3.9e-11 73.9 68 60.3
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 3.3e-10 70.9 58 62.1
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 3.3e-10 70.9 58 62.1
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 3.3e-10 70.9 56 64.3
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 9.6e-10 69.3 59 59.3
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 9.6e-10 69.3 56 60.7
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 2.8e-09 67.8 42 71.4
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 6.2e-09 66.6 46 67.4
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 1.4e-08 65.5 35 82.9
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 4.0e-08 63.9 67 59.7
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.3e-08 63.5 52 67.3
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 1.2e-07 62.4 84 46.4
Solyc02g011990.1 Solanum lycopersicum HOM05D001387 ORTHO05D001250 2.0e-07 61.6 37 78.4
BolSC29t60444H Brassica oleracea HOM05D004473 ORTHO05D005652 2.6e-07 61.2 52 57.7
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 4.4e-07 60.5 42 78.6
Oeu022565.1 Olea europaea HOM05D004473 ORTHO05D005652 9.9e-07 59.3 39 74.4
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 6.4e-06 56.6 78 44.9


User provided reference genes

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