Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 3.1e-60 235.0 121 100.0
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 7.2e-57 223.8 121 95.0
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.6e-56 222.6 121 93.4
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 2.1e-56 222.2 121 94.2
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 2.6e-54 215.3 121 91.7
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 1.2e-51 206.5 114 92.1
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 3.5e-51 204.9 114 91.2
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 1.0e-47 193.4 121 81.8
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 4.8e-45 184.5 121 78.5
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 4.8e-45 184.5 121 78.5
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 6.3e-45 184.1 104 90.4
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 2.4e-44 182.2 119 76.5
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 3.1e-44 181.8 121 72.7
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 3.1e-44 181.8 121 80.2
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 7.0e-44 180.6 121 76.9
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 9.1e-44 180.3 121 76.0
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 9.1e-44 180.3 119 75.6
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 1.0e-42 176.8 121 73.6
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 1.0e-42 176.8 121 73.6
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 3.8e-42 174.9 121 73.6
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 6.5e-42 174.1 121 75.2
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 8.5e-42 173.7 121 71.9
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 1.1e-41 173.3 121 70.2
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.5e-41 172.9 121 72.7
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.5e-41 172.9 121 72.7
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 1.9e-41 172.6 121 71.9
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 1.9e-41 172.6 121 69.4
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 1.9e-41 172.6 121 68.6
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 2.5e-41 172.2 121 71.1
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 4.2e-41 171.4 121 68.6
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 7.2e-41 170.6 121 68.6
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 7.2e-41 170.6 121 71.1
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 7.2e-41 170.6 121 67.8
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 9.5e-41 170.2 121 71.9
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 1.2e-40 169.9 121 68.6
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.6e-40 169.5 121 72.7
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.6e-40 169.5 121 70.2
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 2.1e-40 169.1 121 69.4
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 3.6e-40 168.3 121 68.6
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 4.7e-40 167.9 121 72.7
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 6.1e-40 167.5 121 71.9
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 1.4e-39 166.4 112 72.3
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 1.4e-39 166.4 121 70.2
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 1.8e-39 166.0 121 67.8
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 1.8e-39 166.0 112 71.4
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 3.0e-39 165.2 121 71.1
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 3.0e-39 165.2 121 66.9
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 3.0e-39 165.2 121 71.1
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 3.0e-39 165.2 121 68.6
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 4.0e-39 164.9 114 71.1
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 5.2e-39 164.5 109 72.5
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 6.8e-39 164.1 121 68.6
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 8.8e-39 163.7 121 67.8
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 8.8e-39 163.7 121 66.9
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 1.2e-38 163.3 114 70.2
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.5e-38 162.9 121 69.4
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 2.0e-38 162.5 112 71.4
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 3.4e-38 161.8 115 68.7
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 4.4e-38 161.4 114 71.1
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 4.4e-38 161.4 112 70.5
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 5.7e-38 161.0 112 70.5
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 1.7e-37 159.5 111 69.4
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 2.2e-37 159.1 146 60.3
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 2.8e-37 158.7 114 71.1
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 2.8e-37 158.7 101 77.2
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 6.3e-37 157.5 114 68.4
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 8.3e-37 157.1 114 71.1
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 1.1e-36 156.8 112 67.9
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.4e-36 156.4 114 70.2
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 1.4e-36 156.4 121 70.2
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 1.4e-36 156.4 114 71.1
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.8e-36 156.0 121 66.1
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 1.8e-36 156.0 119 67.2
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 4.1e-36 154.8 114 70.2
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 5.4e-36 154.5 114 69.3
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 9.2e-36 153.7 114 69.3
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 1.2e-35 153.3 114 69.3
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 1.2e-35 153.3 114 69.3
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 1.2e-35 153.3 104 75.0
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 1.2e-35 153.3 121 62.8
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 1.6e-35 152.9 118 64.4
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 1.6e-35 152.9 118 64.4
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 1.6e-35 152.9 114 69.3
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 2.0e-35 152.5 114 69.3
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 2.7e-35 152.1 106 72.6
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 2.7e-35 152.1 114 64.0
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 3.5e-35 151.8 115 67.8
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 5.9e-35 151.0 113 70.8
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 5.9e-35 151.0 111 67.6
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 1.3e-34 149.8 104 74.0
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 1.3e-34 149.8 121 64.5
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 3.8e-34 148.3 95 77.9
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 3.8e-34 148.3 107 68.2
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.1e-33 146.7 108 66.7
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 4.3e-33 144.8 104 67.3
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 5.6e-33 144.4 107 64.5
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 7.3e-33 144.1 112 67.9
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 2.1e-32 142.5 107 68.2
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 2.1e-32 142.5 107 63.6
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 3.6e-32 141.7 89 80.9
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 6.1e-32 141.0 104 66.3
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 1.0e-31 140.2 104 67.3
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 1.4e-31 139.8 108 63.0
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 1.4e-31 139.8 104 70.2
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 1.8e-31 139.4 89 78.7
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 3.0e-31 138.7 110 65.5
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 4.0e-31 138.3 104 63.5
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 5.2e-31 137.9 109 64.2
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 6.8e-31 137.5 110 62.7
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 6.8e-31 137.5 114 62.3
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 6.8e-31 137.5 112 61.6
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 8.9e-31 137.1 91 72.5
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.5e-30 136.3 83 80.7
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 2.6e-30 135.6 104 69.2
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 2.6e-30 135.6 104 67.3
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 4.4e-30 134.8 110 57.3
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 5.7e-30 134.4 109 60.6
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 1.3e-29 133.3 96 66.7
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 2.2e-29 132.5 104 62.5
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 1.1e-28 130.2 105 63.8
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 1.1e-28 130.2 98 67.3
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.1e-28 130.2 104 62.5
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 5.9e-27 124.4 126 56.3
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.9e-25 119.4 93 63.4
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 2.5e-25 119.0 101 55.4
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 4.3e-25 118.2 103 60.2
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 7.3e-25 117.5 70 85.7
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.5e-22 109.8 75 77.3
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 2.2e-21 105.9 95 52.6
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 1.9e-20 102.8 109 52.3
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 6.6e-18 94.4 105 54.3
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 5.6e-17 91.3 60 73.3
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.2e-14 83.6 66 62.1
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 2.9e-13 79.0 110 40.9
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.4e-12 75.9 66 57.6
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.5e-09 65.9 52 59.6
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 5.6e-09 64.7 81 45.7
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 1.1e-07 60.5 106 35.8
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 2.3e-07 59.3 99 32.3


User provided reference genes

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