Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.4e-295 1018.8 523 100.0
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.4e-277 959.1 523 93.9
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.3e-231 803.9 502 84.1
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 7.8e-225 783.9 425 94.6
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 7.3e-223 777.3 512 76.8
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 4.9e-219 764.6 511 75.1
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.4e-218 763.1 524 74.6
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.9e-218 762.7 540 73.0
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 3.2e-218 761.9 512 75.0
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.2e-218 761.9 519 74.0
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 9.2e-218 760.4 534 73.8
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 4.6e-217 758.1 512 75.2
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 7.8e-217 757.3 512 75.6
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 1.3e-216 756.5 532 73.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.6e-215 750.4 524 73.7
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.6e-214 749.6 521 72.9
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 3.6e-214 748.4 528 72.5
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 3.6e-214 748.4 524 73.5
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 6.9e-213 744.2 523 72.1
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.5e-212 743.0 512 72.9
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 2.6e-212 742.3 511 73.6
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 3.4e-212 741.9 512 71.9
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 5.8e-212 741.1 529 70.5
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.9e-212 740.3 526 72.4
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 9.9e-212 740.3 512 74.4
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.2e-211 739.2 495 75.8
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 4.9e-211 738.0 514 73.2
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 8.4e-211 737.3 536 71.3
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 2.4e-210 735.7 520 71.5
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 9.3e-210 733.8 520 71.3
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 3.5e-209 731.9 512 72.3
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.7e-208 729.6 529 70.7
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.7e-208 729.6 512 71.9
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 3.9e-208 728.4 509 72.1
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.1e-207 726.9 512 72.9
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.1e-207 726.9 512 72.1
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.5e-207 725.7 515 71.7
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 3.3e-207 725.3 517 72.7
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 5.6e-207 724.5 598 64.9
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.8e-205 719.5 512 70.9
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.6e-204 715.7 515 71.7
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.6e-204 715.7 517 70.4
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 2.9e-203 712.2 512 71.9
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 4.9e-203 711.4 518 70.1
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 8.4e-203 710.7 512 70.9
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 7.1e-202 707.6 521 68.7
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 9.3e-202 707.2 518 69.5
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 2.7e-201 705.7 516 70.3
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 1.8e-200 703.0 516 70.2
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 2.3e-200 702.6 509 69.5
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.3e-200 702.6 503 73.2
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 7.4e-199 697.6 515 69.3
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 9.6e-199 697.2 520 66.9
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.6e-198 696.4 507 71.2
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 6.9e-197 691.0 477 73.6
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 9.9e-196 687.2 512 68.8
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 3.8e-195 685.3 525 69.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 8.4e-195 684.1 470 74.7
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 2.3e-192 676.0 423 82.5
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 2.5e-191 672.5 521 66.2
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 1.4e-189 666.8 616 59.1
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 5.3e-189 664.8 472 71.4
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.0e-188 662.9 627 58.2
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.4e-188 662.1 509 68.0
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 6.5e-187 657.9 508 67.5
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.1e-186 654.4 444 75.7
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.0e-184 650.6 555 62.2
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.8e-184 649.8 519 64.9
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 5.1e-184 648.3 527 65.7
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.5e-183 646.7 446 75.6
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.3e-182 643.7 433 76.9
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.1e-181 640.6 523 66.0
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 4.5e-180 635.2 515 62.7
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 4.2e-178 628.6 474 69.2
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.2e-177 627.1 426 78.6
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 5.7e-175 618.2 539 62.3
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 5.7e-175 618.2 514 63.4
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 7.4e-175 617.8 534 62.4
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.2e-171 606.3 435 70.1
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.8e-171 605.5 549 60.5
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 4.2e-170 602.1 457 70.7
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 9.4e-170 600.9 489 65.4
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.8e-168 596.7 430 72.8
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 3.7e-166 589.0 418 73.4
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 4.5e-164 582.0 406 74.1
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.3e-163 580.5 421 70.3
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 4.7e-161 572.0 592 56.1
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.0e-160 570.9 534 59.4
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.9e-160 568.9 387 77.0
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 5.2e-160 568.5 554 56.3
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 2.4e-157 559.7 510 58.4
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 1.0e-155 554.3 448 65.4
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.9e-154 550.1 572 55.4
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 4.7e-153 545.4 523 56.0
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 8.0e-145 518.1 446 59.9
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.2e-143 514.2 505 55.8
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 6.5e-139 498.4 465 57.2
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 5.5e-138 495.4 376 68.6
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 7.2e-138 495.0 399 68.2
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.1e-137 493.4 474 57.6
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.8e-137 493.0 457 59.5
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 2.8e-134 483.0 474 56.1
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 4.3e-122 442.6 512 47.1
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.6e-121 439.5 322 73.3
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 9.8e-119 431.4 301 73.4
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.3e-118 431.0 395 59.2
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.0e-117 425.2 289 75.4
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.4e-111 406.0 332 65.4
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.7e-110 402.9 478 46.2
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.3e-107 394.4 514 43.6
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.4e-103 379.8 461 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.5e-95 354.4 456 44.5
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 4.4e-95 352.8 252 71.8
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.3e-83 314.7 383 49.1
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.3e-80 302.8 212 73.1
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 3.4e-79 300.1 263 62.0
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.4e-72 278.1 194 75.8
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.5e-71 274.6 191 72.3
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.5e-68 263.5 429 39.2
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 1.0e-67 261.9 428 40.2
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 5.9e-63 246.1 214 64.0
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 9.4e-61 238.8 654 30.4
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.9e-53 214.5 162 66.0
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.9e-52 209.1 198 55.1
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 5.9e-47 193.0 183 57.4
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.2e-44 185.3 97 92.8
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 2.7e-44 184.1 508 30.1
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 2.2e-41 174.5 96 94.8
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.6e-39 167.5 158 59.5
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.2e-38 164.5 150 56.0
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.9e-37 161.4 162 53.1
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.3e-34 150.6 104 77.9
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.2e-33 147.9 122 56.6
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 1.3e-30 138.7 557 26.6
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 1.2e-28 132.1 111 64.0
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.7e-28 131.0 153 47.7
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.7e-28 131.0 153 47.7
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.4e-27 128.6 86 72.1
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.6e-26 124.4 97 59.8
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 7.2e-21 106.3 88 69.3
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 7.2e-21 106.3 78 60.3
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 8.0e-20 102.8 54 87.0
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.3e-19 101.3 67 76.1
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.0e-18 98.2 62 85.5
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.0e-18 98.2 62 85.5
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.7e-17 95.1 56 85.7
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 6.3e-17 93.2 93 45.2
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 5.4e-16 90.1 244 32.8
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 9.2e-16 89.4 49 87.8
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.5e-13 81.3 53 69.8
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 2.5e-13 81.3 80 57.5
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.8e-11 75.1 55 70.9
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.7e-06 58.5 183 29.0
AagrBONN_evm.TU.Sc2ySwM_117.318 Anthoceros agrestis HOM05D004498 ORTHO05D005300 8.6e-06 56.2 111 32.4


User provided reference genes

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