Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G931.8 Capsicum annuum HOM05D006530 ORTHO05D008283 0.0e+00 1233.4 640 100.0
PGSC0003DMG400013890 Solanum tuberosum HOM05D006530 ORTHO05D008283 5.9e-291 1003.8 643 82.9
Sopen12g001950 Solanum pennellii HOM05D006530 ORTHO05D008283 2.3e-287 991.9 643 80.7
Solyc12g005980.2 Solanum lycopersicum HOM05D006530 ORTHO05D008283 1.1e-281 973.0 643 80.2
Nitab4.5_0000622g0140 Nicotiana tabacum HOM05D006530 ORTHO05D008283 2.6e-275 951.8 647 77.7
Nitab4.5_0005875g0040 Nicotiana tabacum HOM05D006530 ORTHO05D008283 2.1e-272 942.2 624 78.5
Peaxi162Scf00047g02037 Petunia axillaris HOM05D006530 ORTHO05D008283 1.2e-248 863.2 648 73.0
Atru.chr6.3278 Acer truncatum HOM05D006530 ORTHO05D008283 6.3e-176 621.7 691 52.4
Atru.chr6.3294 Acer truncatum HOM05D006530 ORTHO05D008283 1.1e-175 620.9 691 52.2
Hma1.2p1_0445F.1_g154110 Hydrangea macrophylla HOM05D006530 ORTHO05D008283 2.2e-173 613.2 661 53.4
COL.COLO4_32787 Corchorus olitorius HOM05D006530 ORTHO05D008283 2.7e-171 606.3 660 52.6
Duzib133G1057 Durio zibethinus HOM05D006530 ORTHO05D008283 2.3e-170 603.2 692 52.0
Gorai.001G218200 Gossypium raimondii HOM05D006530 ORTHO05D008283 1.5e-169 600.5 673 52.2
Thecc.01G184900 Theobroma cacao HOM05D006530 ORTHO05D008283 3.3e-169 599.4 676 51.0
Cfa014298 Carpinus fangiana HOM05D006530 ORTHO05D008283 2.2e-168 596.7 654 52.8
Gohir.A07G188400 Gossypium hirsutum HOM05D006530 ORTHO05D008283 2.2e-168 596.7 666 52.7
Cc05_g02470 Coffea canephora HOM05D006530 ORTHO05D008283 6.3e-168 595.1 646 52.2
Gohir.D07G195000 Gossypium hirsutum HOM05D006530 ORTHO05D008283 4.1e-167 592.4 677 52.3
Rhsim06G0169800 Rhododendron simsii HOM05D006530 ORTHO05D008283 1.0e-165 587.8 654 54.0
MSTRG.14123 Avicennia marina HOM05D006530 ORTHO05D008283 1.5e-164 583.9 644 52.3
Haze_12746 Corylus avellana HOM05D006530 ORTHO05D008283 1.5e-164 583.9 655 52.4
SalBow3G0397 Salvia bowleyana HOM05D006530 ORTHO05D008283 1.9e-164 583.6 648 51.9
CSS0049970 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 7.2e-164 581.6 688 51.3
Ciclev10014523m.g Citrus clementina HOM05D006530 ORTHO05D008283 2.1e-163 580.1 662 51.4
CSS0002282 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 8.0e-163 578.2 688 51.2
TWI18G1412 Tripterygium wilfordii HOM05D006530 ORTHO05D008283 8.0e-163 578.2 654 50.9
DCAR_019250 Daucus carota HOM05D006530 ORTHO05D008283 1.8e-162 577.0 653 50.8
Migut.H01255 Erythranthe guttata HOM05D006530 ORTHO05D008283 1.8e-162 577.0 647 51.3
QL08p029933 Quercus lobata HOM05D006530 ORTHO05D008283 3.0e-162 576.2 715 49.5
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 4.8e-160 568.9 696 50.0
PSO541G4152 Papaver somniferum HOM05D006530 ORTHO05D008283 4.1e-159 565.8 669 50.2
TAR624G0329 Trochodendron aralioides HOM05D006530 ORTHO05D008283 4.5e-158 562.4 719 47.1
SalBow1G8616 Salvia bowleyana HOM05D006530 ORTHO05D008283 1.3e-157 560.8 694 48.1
AUR62017570 Chenopodium quinoa HOM05D006530 ORTHO05D008283 1.7e-157 560.5 678 49.1
FvH4_6g41820 Fragaria vesca HOM05D006530 ORTHO05D008283 1.7e-157 560.5 666 49.4
RcHm_v2.0_Chr2g0157621 Rosa chinensis HOM05D006530 ORTHO05D008283 3.8e-157 559.3 674 49.3
THA.LOC104808864 Tarenaya hassleriana HOM05D006530 ORTHO05D008283 5.0e-157 558.9 667 49.6
ECA236G0541 Erigeron canadensis HOM05D006530 ORTHO05D008283 6.5e-157 558.5 658 52.1
FAN09G3579 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.5e-156 557.4 669 50.2
Cpa.g.sc132.47 Carica papaya HOM05D006530 ORTHO05D008283 1.9e-156 557.0 634 52.5
Eucgr.K00730 Eucalyptus grandis HOM05D006530 ORTHO05D008283 4.2e-156 555.8 676 48.8
Aqoxy1G02869 Aquilegia oxysepala HOM05D006530 ORTHO05D008283 9.4e-156 554.7 687 48.5
AUR62015107 Chenopodium quinoa HOM05D006530 ORTHO05D008283 1.2e-155 554.3 680 48.4
MD09G1117000 Malus domestica HOM05D006530 ORTHO05D008283 6.1e-155 552.0 658 50.6
MELO3C019717.2 Cucumis melo HOM05D006530 ORTHO05D008283 3.0e-154 549.7 690 47.8
Lj1A785T50 Lonicera japonica HOM05D006530 ORTHO05D008283 4.0e-154 549.3 681 48.9
Sabra14G0122100 Salix brachista HOM05D006530 ORTHO05D008283 5.2e-154 548.9 699 49.4
Glyma.20G058500 Glycine max HOM05D006530 ORTHO05D008283 6.8e-154 548.5 639 50.1
HanXRQChr16g0508331 Helianthus annuus HOM05D006530 ORTHO05D008283 2.6e-153 546.6 643 51.2
CsaV3_6G015570 Cucumis sativus L. HOM05D006530 ORTHO05D008283 5.7e-153 545.4 698 47.6
Prupe.3G206900 Prunus persica HOM05D006530 ORTHO05D008283 1.7e-152 543.9 698 48.4
Medtr3g082840 Medicago truncatula HOM05D006530 ORTHO05D008283 2.2e-152 543.5 649 47.9
arahy.Tifrunner.gnm1.ann1.B2HSRW Arachis hypogaea HOM05D006530 ORTHO05D008283 6.3e-152 542.0 645 48.2
Phvul.006G013400 Phaseolus vulgaris HOM05D006530 ORTHO05D008283 1.1e-151 541.2 645 49.0
arahy.Tifrunner.gnm1.ann1.KP8KK1 Arachis hypogaea HOM05D006530 ORTHO05D008283 4.1e-151 539.3 639 47.1
Manes.12G056700 Manihot esculenta HOM05D006530 ORTHO05D008283 5.4e-151 538.9 786 44.5
Nn1g03345 Nelumbo nucifera HOM05D006530 ORTHO05D008283 9.1e-151 538.1 715 45.3
AT5G35690 Arabidopsis thaliana HOM05D006530 ORTHO05D008283 1.2e-150 537.7 649 47.6
Psat5g104000 Pisum sativum HOM05D006530 ORTHO05D008283 2.2e-149 533.5 636 47.5
Aa31sc124G40 Aethionema arabicum HOM05D006530 ORTHO05D008283 2.9e-149 533.1 641 48.7
Lalb_Chr08g0236491 Lupinus albus HOM05D006530 ORTHO05D008283 3.8e-149 532.7 636 48.1
CANSAT64G1714 Cannabis sativa HOM05D006530 ORTHO05D008283 1.2e-147 527.7 684 47.8
GSVIVG01030533001 Vitis vinifera HOM05D006530 ORTHO05D008283 1.6e-147 527.3 625 50.4
Lj6g0023666 Lotus japonicus HOM05D006530 ORTHO05D008283 8.8e-146 521.5 632 47.8
Os08g0500800 Oryza sativa ssp. japonica HOM05D006530 ORTHO05D008283 8.8e-146 521.5 685 46.9
Ca_16350_v3 Cicer arietinum L. HOM05D006530 ORTHO05D008283 1.5e-145 520.8 634 47.8
Sp7g06570 Schrenkiella parvula HOM05D006530 ORTHO05D008283 2.6e-145 520.0 641 47.4
PGR142G2443 Punica granatum HOM05D006530 ORTHO05D008283 3.4e-145 519.6 784 43.2
AL7G44540 Arabidopsis lyrata HOM05D006530 ORTHO05D008283 4.4e-145 519.2 645 47.6
EL10Ac9g22807 Beta vulgaris HOM05D006530 ORTHO05D008283 4.4e-145 519.2 709 47.0
Thhalv10003827m.g Eutrema salsugineum HOM05D006530 ORTHO05D008283 7.5e-145 518.5 638 49.5
Zm00001eb034180 Zea mays HOM05D006530 ORTHO05D008283 1.7e-144 517.3 669 46.0
Carub.0007s3142 Capsella rubella HOM05D006530 ORTHO05D008283 2.8e-144 516.5 650 46.8
VMungo0540G0580 Vigna mungo HOM05D006530 ORTHO05D008283 8.3e-144 515.0 635 47.4
Hund24188 Selenicereus undatus HOM05D006530 ORTHO05D008283 4.5e-142 509.2 679 45.4
Oeu061995.2 Olea europaea HOM05D006530 ORTHO05D008283 1.0e-141 508.1 774 42.8
CARHR217000 Cardamine hirsuta HOM05D006530 ORTHO05D008283 1.1e-140 504.6 637 47.1
Dinv08706 Davidia involucrata HOM05D006530 ORTHO05D008283 2.5e-140 503.4 604 52.0
unitig_26.g9922 Utricularia gibba HOM05D006530 ORTHO05D008283 5.2e-138 495.7 634 46.8
vmacro12144 Vaccinium macrocarpon HOM05D006530 ORTHO05D008283 8.9e-138 495.0 797 43.2
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 1.5e-137 494.2 649 45.8
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 3.4e-137 493.0 647 46.2
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 3.4e-137 493.0 647 46.2
C04p43360 Brassica napus HOM05D006530 ORTHO05D008283 5.7e-137 492.3 649 45.6
BolC4t25914H Brassica oleracea HOM05D006530 ORTHO05D008283 7.5e-137 491.9 653 45.6
Lsat_1_v5_gn_7_94721 Lactuca sativa HOM05D006530 ORTHO05D008283 1.3e-136 491.1 637 48.2
Sed0022132 Sechium edule HOM05D006530 ORTHO05D008283 3.7e-136 489.6 822 39.4
FAN14G2540 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.2e-134 484.6 666 45.3
CDE10G0969 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 4.6e-134 482.6 773 42.4
CiPaw.03G274100 Carya illinoinensis HOM05D006530 ORTHO05D008283 3.9e-133 479.6 589 49.7
BcaB06g26968 Brassica carinata HOM05D006530 ORTHO05D008283 1.8e-130 470.7 639 44.8
ATR1128G020 Amborella trichopoda HOM05D006530 ORTHO05D008283 2.2e-128 463.8 801 40.4
HPP92_018405 Vanilla planifolia HOM05D006530 ORTHO05D008283 2.0e-126 457.2 643 43.7
Actinidia09758 Actinidia chinensis HOM05D006530 ORTHO05D008283 2.1e-118 430.6 674 43.5
Pp3c20_8530 Physcomitrium patens HOM05D006530 ORTHO05D008283 1.0e-117 428.3 672 42.1
Sc20g0005070 Simmondsia chinensis HOM05D006530 ORTHO05D008283 1.7e-117 427.6 609 44.0
FAN02G4367 Fragaria x ananassa HOM05D006530 ORTHO05D008283 9.9e-113 411.8 396 58.6
CDE10G0956 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 1.1e-108 398.3 775 37.7
SGA_v2.0_scaffold49G18363 Striga asiatica HOM05D006530 ORTHO05D008283 3.6e-99 366.7 642 38.9
ATR1001G009 Amborella trichopoda HOM05D006530 ORTHO05D008283 6.2e-99 365.9 394 51.0
SEGI_28144 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 1.9e-95 354.4 361 54.8
AagrBONN_evm.TU.Sc2ySwM_228.92 Anthoceros agrestis HOM05D006530 ORTHO05D008283 1.7e-93 347.8 710 36.5
BcaB06g26965 Brassica carinata HOM05D006530 ORTHO05D008283 4.6e-86 323.2 537 40.8
Mapoly0071s0087 Marchantia polymorpha HOM05D006530 ORTHO05D008283 1.1e-79 302.0 389 46.3
TPR.G7490 Trifolium pratense HOM05D006530 ORTHO05D008283 1.7e-72 278.1 441 41.3
TPR.G22470 Trifolium pratense HOM05D006530 ORTHO05D008283 1.9e-68 264.6 198 64.1
ClCG02G018190 Citrullus lanatus HOM05D006530 ORTHO05D008283 1.6e-54 218.4 673 31.2
MCO07G103 Micromonas commoda HOM05D006530 ORTHO05D008283 7.5e-44 183.0 307 36.8
Cre16.g684000 Chlamydomonas reinhardtii HOM05D006530 ORTHO05D008283 5.9e-41 173.3 261 38.3
MD17G1108500 Malus domestica HOM05D006530 ORTHO05D008283 3.8e-40 170.6 638 28.7
FAN03G2558 Fragaria x ananassa HOM05D006530 ORTHO05D008283 3.6e-38 164.1 141 60.3
SEGI_11846 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 1.6e-30 138.7 123 53.7
FAN15G1469 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.0e-28 131.7 114 60.5
FAN27G2805 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.0e-28 131.7 114 60.5
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 5.7e-28 130.2 113 60.2
Cfa025683 Carpinus fangiana HOM05D006530 ORTHO05D008283 2.1e-22 111.7 283 31.8
BcaB06g26964 Brassica carinata HOM05D006530 ORTHO05D008283 2.0e-17 95.1 81 55.6
SGA_v2.0_scaffold112G31585 Striga asiatica HOM05D006530 ORTHO05D008283 4.7e-14 84.0 165 37.0
SHI10239 Sapria himalayana HOM05D006530 ORTHO05D008283 6.8e-13 80.1 97 43.3
SMO361G0751 Selaginella moellendorffii HOM05D003423 ORTHO05D003910 1.7e-11 75.5 139 36.0
Eucgr.F02068 Eucalyptus grandis HOM05D003423 ORTHO05D003910 1.9e-10 72.0 186 30.1
MBI16_g46430_MAGBIO Magnolia biondii HOM05D003423 ORTHO05D003910 1.9e-10 72.0 179 31.8
Aqoxy6G02866 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 3.2e-10 71.2 129 35.7
MD11G1201700 Malus domestica HOM05D003423 ORTHO05D003910 4.1e-10 70.9 109 37.6
RcHm_v2.0_Chr5g0054021 Rosa chinensis HOM05D003423 ORTHO05D003910 5.4e-10 70.5 175 32.6
Lj6g0015704 Lotus japonicus HOM05D003423 ORTHO05D003910 7.0e-10 70.1 184 32.1
TWI39G0701 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 9.2e-10 69.7 183 30.6
Lj1A888G39 Lonicera japonica HOM05D003423 ORTHO05D003910 2.0e-09 68.6 117 34.2
CiPaw.12G136700 Carya illinoinensis HOM05D003423 ORTHO05D003910 4.6e-09 67.4 126 32.5
FvH4_3g29470 Fragaria vesca HOM05D003423 ORTHO05D003910 4.6e-09 67.4 109 35.8
Prupe.4G239900 Prunus persica HOM05D003423 ORTHO05D003910 4.6e-09 67.4 173 31.8
TAR624G0752 Trochodendron aralioides HOM05D003423 ORTHO05D003910 7.8e-09 66.6 121 34.7
FAN25G2240 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.0e-08 66.2 110 37.3
ClCG04G000610 Citrullus lanatus HOM05D003423 ORTHO05D003910 1.3e-08 65.9 120 36.7
MELO3C009034.2 Cucumis melo HOM05D003423 ORTHO05D003910 1.3e-08 65.9 176 31.2
MBI19_g29441_MAGBIO Magnolia biondii HOM05D006530 ORTHO05D008283 1.7e-08 65.5 127 34.6
Cc05_g14820 Coffea canephora HOM05D003423 ORTHO05D003910 2.3e-08 65.1 117 33.3
FAN11G0659 Fragaria x ananassa HOM05D003423 ORTHO05D003910 2.3e-08 65.1 109 34.9
Sed0010386 Sechium edule HOM05D003423 ORTHO05D003910 2.3e-08 65.1 178 31.5
Dinv10321 Davidia involucrata HOM05D003423 ORTHO05D003910 3.0e-08 64.7 174 32.8
CDE04G0040 Ceratophyllum demersum HOM05D003423 ORTHO05D003910 5.0e-08 63.9 105 37.1
Oeu041432.1 Olea europaea HOM05D003423 ORTHO05D003910 5.0e-08 63.9 120 30.0
GSVIVG01014644001 Vitis vinifera HOM05D003423 ORTHO05D003910 5.0e-08 63.9 175 31.4
ATR0580G345 Amborella trichopoda HOM05D003423 ORTHO05D003910 6.6e-08 63.5 113 33.6
AagrBONN_evm.TU.Sc2ySwM_228.5488 Anthoceros agrestis HOM05D003423 ORTHO05D003910 6.6e-08 63.5 158 32.3
CsaV3_7G018340 Cucumis sativus L. HOM05D003423 ORTHO05D003910 6.6e-08 63.5 158 32.9
ClCG09G021170 Citrullus lanatus HOM05D003423 ORTHO05D003910 8.6e-08 63.2 175 30.3
MELO3C024918.2 Cucumis melo HOM05D003423 ORTHO05D003910 8.6e-08 63.2 158 32.9
SHI10236 Sapria himalayana HOM05D006530 ORTHO05D008283 8.6e-08 63.2 72 47.2
SEGI_36313 Sequoiadendron giganteum HOM05D003423 ORTHO05D003910 8.6e-08 63.2 105 36.2
Oeu051387.2 Olea europaea HOM05D003423 ORTHO05D003910 1.1e-07 62.8 109 34.9
CiPaw.11G202400 Carya illinoinensis HOM05D003423 ORTHO05D003910 1.5e-07 62.4 179 29.1
DCAR_007666 Daucus carota HOM05D003423 ORTHO05D003910 1.5e-07 62.4 107 35.5
Actinidia37163 Actinidia chinensis HOM05D003423 ORTHO05D003910 1.9e-07 62.0 174 30.5
Cfa022425 Carpinus fangiana HOM05D003423 ORTHO05D003910 2.5e-07 61.6 199 31.2
Potri.011G092900 Populus trichocarpa HOM05D003423 ORTHO05D003910 2.5e-07 61.6 180 28.9
Manes.15G061600 Manihot esculenta HOM05D003423 ORTHO05D003910 4.3e-07 60.8 256 26.6
Pp3c5_3280 Physcomitrium patens HOM05D003423 ORTHO05D003910 4.3e-07 60.8 158 33.5
CSS0034763 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 5.6e-07 60.5 109 33.0
CSS0038448 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 5.6e-07 60.5 109 33.0
FAN21G0447 Fragaria x ananassa HOM05D003423 ORTHO05D003910 5.6e-07 60.5 172 30.2
HanXRQChr09g0277351 Helianthus annuus HOM05D003423 ORTHO05D003910 5.6e-07 60.5 183 28.4
Eucgr.F03997 Eucalyptus grandis HOM05D003423 ORTHO05D003910 7.3e-07 60.1 120 34.2
SHI26527 Sapria himalayana HOM05D003423 ORTHO05D003910 1.2e-06 59.3 178 30.9
A03p41860 Brassica napus HOM05D003344 ORTHO05D003981 1.6e-06 58.9 86 40.7
THA.LOC104810286 Tarenaya hassleriana HOM05D003423 ORTHO05D003910 1.6e-06 58.9 253 26.9
MSTRG.14479 Avicennia marina HOM05D003423 ORTHO05D003910 3.6e-06 57.8 117 30.8
unitig_27.g25148 Utricularia gibba HOM05D003423 ORTHO05D003910 3.6e-06 57.8 117 29.9
CBR_g12763 Chara braunii HOM05D003423 ORTHO05D003910 8.1e-06 56.6 110 33.6


User provided reference genes

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