Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 0.0e+00 1077.8 654 100.0
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 1.4e-279 966.1 654 84.6
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 8.4e-277 956.8 654 83.5
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 5.6e-273 944.1 656 87.3
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 1.1e-271 939.9 654 82.4
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 1.4e-268 929.5 656 86.4
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 4.1e-247 858.2 658 76.6
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 8.6e-197 691.0 654 56.4
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 2.1e-195 686.4 649 57.0
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 3.4e-193 679.1 652 58.1
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 2.3e-189 666.4 653 54.7
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 1.1e-188 664.1 653 54.7
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 7.6e-185 651.4 651 54.2
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 2.4e-183 646.4 627 55.2
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 1.2e-182 644.0 656 53.7
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 6.0e-182 641.7 656 53.5
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 8.6e-181 637.9 621 55.1
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 1.0e-173 614.4 644 53.3
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 1.5e-169 600.5 652 50.9
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 2.1e-166 590.1 651 57.3
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 3.9e-165 585.9 654 62.1
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 1.8e-162 577.0 648 61.9
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 3.1e-162 576.2 549 56.6
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 9.0e-162 574.7 626 51.6
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 2.0e-161 573.5 651 57.1
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 1.3e-160 570.9 657 49.6
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 4.9e-160 568.9 553 61.1
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 5.5e-159 565.5 631 55.6
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 8.7e-157 558.1 649 47.9
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 8.7e-157 558.1 649 48.4
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 3.3e-156 556.2 645 54.1
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 1.3e-155 554.3 657 48.1
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 1.1e-154 551.2 650 56.3
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 1.0e-152 544.7 653 50.4
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 1.0e-152 544.7 633 58.3
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 1.3e-152 544.3 624 48.9
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 1.3e-152 544.3 665 47.5
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 1.3e-152 544.3 636 48.7
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 3.8e-152 542.7 644 54.7
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 8.4e-152 541.6 639 57.6
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 1.4e-151 540.8 651 47.5
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 9.3e-151 538.1 668 49.9
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 2.1e-150 537.0 653 46.7
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 2.3e-149 533.5 659 53.4
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 1.1e-148 531.2 644 46.7
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 2.2e-147 526.9 646 46.1
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 1.4e-146 524.2 659 53.0
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 2.4e-146 523.5 662 52.3
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 6.9e-146 521.9 646 45.8
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 2.0e-145 520.4 648 46.1
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 3.4e-145 519.6 638 51.4
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 5.9e-145 518.8 628 45.9
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 1.3e-144 517.7 631 59.0
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 1.7e-144 517.3 640 45.9
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 2.2e-144 516.9 512 53.9
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 1.9e-143 513.8 633 46.6
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 4.2e-143 512.7 652 52.5
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 2.1e-142 510.4 646 44.7
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 3.0e-141 506.5 645 45.7
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 6.7e-141 505.4 639 45.2
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 4.3e-140 502.7 648 56.5
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 5.7e-140 502.3 653 51.0
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 8.2e-139 498.4 660 55.5
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 1.7e-136 490.7 651 49.9
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 7.2e-135 485.3 658 43.2
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 9.4e-135 485.0 639 50.5
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 2.7e-134 483.4 626 57.8
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 2.6e-132 476.9 645 44.0
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 1.8e-130 470.7 652 54.1
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 3.1e-130 469.9 647 42.5
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 1.0e-128 464.9 642 42.7
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 2.5e-127 460.3 665 42.7
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 1.6e-126 457.6 646 42.7
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 2.1e-126 457.2 645 42.6
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 4.7e-126 456.1 646 42.6
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 4.7e-126 456.1 648 42.6
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 1.4e-125 454.5 639 55.9
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 2.0e-124 450.7 644 42.5
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 2.2e-123 447.2 645 42.0
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 1.6e-121 441.0 636 42.6
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 3.8e-120 436.4 520 48.8
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 3.2e-119 433.3 502 49.0
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 6.1e-118 429.1 504 47.4
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 6.5e-112 409.1 517 44.9
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 1.8e-109 401.0 567 43.6
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 2.2e-107 394.0 543 42.2
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 1.6e-105 387.9 631 37.6
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 2.0e-105 387.5 655 38.5
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 2.9e-104 383.6 639 38.2
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 5.6e-95 352.8 384 49.7
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 1.8e-93 347.8 677 34.1
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 1.1e-87 328.6 641 36.8
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 4.7e-86 323.2 634 39.3
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 2.0e-84 317.8 619 41.0
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 3.9e-80 303.5 633 33.5
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 3.9e-80 303.5 633 33.5
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 1.9e-74 284.6 676 30.3
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 2.9e-67 260.8 656 33.1
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 4.9e-51 206.8 643 31.1
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 9.6e-47 192.6 236 46.6
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 1.5e-44 185.3 227 68.7
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 2.2e-35 154.8 222 42.3
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 9.7e-31 139.4 194 41.8
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 3.8e-27 127.5 178 39.3
Actinidia12102 Actinidia chinensis HOM05D006999 ORTHO05D008936 6.9e-21 106.7 154 42.2
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 9.4e-18 96.3 149 42.3
HanXRQChr09g0268161 Helianthus annuus HOM05D006999 ORTHO05D008936 1.1e-15 89.4 151 36.4
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 4.8e-14 84.0 173 27.2
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 2.5e-10 71.6 120 33.3
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 7.2e-10 70.1 170 27.1
Pp3c1_6490 Physcomitrium patens HOM05D006749 ORTHO05D008352 2.7e-09 68.2 140 31.4
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 3.0e-08 64.7 96 33.3
SHI10915 Sapria himalayana HOM05D006749 ORTHO05D008352 3.0e-08 64.7 186 28.5
Hma1.2p1_0180F.1_g079710 Hydrangea macrophylla HOM05D002986 ORTHO05D003966 3.9e-08 64.3 176 26.1
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 6.7e-08 63.5 162 28.4
MELO3C004182.2 Cucumis melo HOM05D000424 ORTHO05D002854 1.5e-07 62.4 211 25.1
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 3.3e-07 61.2 175 26.3
CiPaw.07G116900 Carya illinoinensis HOM05D000424 ORTHO05D002854 5.7e-07 60.5 217 24.9
ATR0003G004 Amborella trichopoda HOM05D002986 ORTHO05D003966 7.4e-07 60.1 153 29.4
AagrBONN_evm.TU.Sc2ySwM_228.1608 Anthoceros agrestis HOM05D004079 ORTHO05D008352 7.4e-07 60.1 158 25.3
MD01G1088700 Malus domestica HOM05D002391 ORTHO05D003966 7.4e-07 60.1 164 28.0
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 9.7e-07 59.7 165 25.5
BolC3t13510H Brassica oleracea HOM05D007661 ORTHO05D009671 2.2e-06 58.5 157 25.5
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 2.2e-06 58.5 169 27.8
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 2.2e-06 58.5 71 50.7
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 2.8e-06 58.2 182 25.8
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 2.8e-06 58.2 90 32.2
Mapoly0116s0031 Marchantia polymorpha HOM05D040657 ORTHO05D023551 6.3e-06 57.0 165 25.5
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 8.2e-06 56.6 161 29.2
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 8.2e-06 56.6 232 22.8
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 8.2e-06 56.6 152 23.0


User provided reference genes

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