Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 8.3e-263 909.8 462 100.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 7.9e-229 797.0 447 88.6
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 6.7e-228 793.9 447 88.6
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.6e-179 632.5 447 73.6
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.5e-166 590.1 447 65.8
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 2.1e-165 586.3 450 64.9
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 3.6e-165 585.5 447 65.5
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.0e-161 571.2 406 75.1
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.6e-157 560.1 453 61.8
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.2e-155 553.9 452 63.1
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-155 553.5 446 62.8
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.4e-155 552.4 450 61.8
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.7e-154 550.1 450 60.9
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.4e-153 547.0 450 60.9
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 4.1e-153 545.4 466 59.7
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.0e-152 543.1 452 61.7
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 6.0e-152 541.6 461 58.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 6.0e-152 541.6 452 60.4
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.6e-151 538.1 454 60.1
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.5e-150 536.2 456 59.4
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 9.5e-150 534.3 445 61.6
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.2e-149 533.9 453 58.5
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.1e-149 533.1 444 60.4
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.7e-149 531.9 448 61.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.4e-148 530.4 455 59.8
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.4e-148 530.4 455 59.8
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.3e-148 529.6 421 63.9
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.1e-148 529.3 452 59.3
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.8e-148 528.1 445 58.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 3.4e-147 525.8 446 59.0
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.7e-146 523.5 445 58.7
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 2.9e-146 522.7 445 57.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 3.7e-146 522.3 446 58.1
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.4e-145 520.4 444 59.0
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-145 520.4 445 57.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 2.4e-145 519.6 445 57.8
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 4.1e-145 518.8 458 58.3
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.2e-145 517.7 450 58.0
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 2.7e-144 516.2 446 56.3
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 3.5e-144 515.8 445 57.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 4.6e-144 515.4 454 57.3
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.7e-143 513.5 460 56.1
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 5.1e-143 511.9 448 59.4
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 8.6e-143 511.1 454 55.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 8.6e-143 511.1 474 55.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.1e-142 510.8 442 58.4
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.9e-142 510.0 459 57.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 3.3e-142 509.2 442 56.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 3.3e-142 509.2 452 57.5
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 3.3e-142 509.2 458 55.0
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.1e-140 504.2 441 57.6
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.4e-140 503.8 458 54.4
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.8e-140 503.4 446 57.8
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.1e-140 502.7 455 55.4
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 4.0e-140 502.3 452 55.5
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 1.5e-139 500.4 448 57.1
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.0e-139 500.0 442 54.8
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.6e-139 499.6 465 55.5
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 3.4e-139 499.2 446 57.4
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.4e-139 498.8 446 57.0
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.2e-138 496.5 461 54.9
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 4.9e-138 495.4 503 51.9
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.1e-137 494.2 446 54.7
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.1e-137 494.2 450 55.8
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.1e-137 494.2 445 55.7
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.1e-137 494.2 450 56.2
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.4e-137 493.8 442 56.3
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.9e-137 493.4 448 55.1
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.4e-137 493.0 458 54.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.1e-137 492.3 550 50.2
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 4.1e-137 492.3 444 57.2
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 5.4e-137 491.9 447 55.0
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 9.2e-137 491.1 445 55.5
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.2e-136 490.7 450 55.6
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-136 490.0 452 55.3
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.1e-136 490.0 449 55.9
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.5e-136 489.2 449 55.7
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 4.6e-136 488.8 444 55.0
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 4.6e-136 488.8 444 55.0
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.0e-136 488.4 447 55.3
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.0e-135 487.6 446 54.0
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.0e-135 487.6 451 55.2
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.3e-135 487.3 456 54.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.3e-135 486.5 456 54.4
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.3e-135 486.5 453 55.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 3.0e-135 486.1 433 55.9
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.0e-135 486.1 435 55.9
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.0e-135 486.1 418 59.1
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 3.9e-135 485.7 447 54.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 5.1e-135 485.3 456 54.2
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 8.6e-135 484.6 433 55.7
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 8.6e-135 484.6 456 54.2
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 8.6e-135 484.6 456 54.2
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-134 484.2 456 53.7
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.1e-134 484.2 443 54.9
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.1e-134 484.2 445 55.7
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.9e-134 483.4 456 53.9
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.9e-134 483.4 447 57.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.3e-134 482.6 432 56.5
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.3e-134 482.3 432 56.2
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 5.6e-134 481.9 450 54.9
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 5.6e-134 481.9 433 55.4
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 7.3e-134 481.5 470 52.3
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 9.6e-134 481.1 434 55.3
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 9.6e-134 481.1 447 55.3
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 2.1e-133 479.9 399 60.2
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.6e-133 479.2 433 56.1
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 6.2e-133 478.4 385 60.5
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 3.1e-132 476.1 478 53.3
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 4.0e-132 475.7 470 51.9
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 8.9e-132 474.6 478 53.3
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.3e-130 470.7 390 60.5
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.3e-130 470.7 464 53.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.4e-129 466.5 479 51.6
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 7.1e-129 464.9 463 52.1
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.1e-129 464.9 439 52.6
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 5.1e-127 458.8 385 58.4
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 5.6e-126 455.3 450 52.7
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.6e-125 452.6 445 52.4
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 6.2e-125 451.8 395 58.2
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.9e-122 442.2 401 57.1
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.2e-121 439.5 446 54.7
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.3e-119 434.1 383 57.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.8e-111 407.1 448 47.8
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.6e-110 402.1 346 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.1e-108 397.9 424 49.1
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 3.1e-108 396.4 383 50.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 3.8e-106 389.4 384 51.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.1e-94 351.3 463 43.8
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.4e-94 348.6 435 46.9
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 3.4e-91 339.7 307 57.7
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.2e-88 331.3 317 53.6
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.6e-78 297.0 273 55.7
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.9e-74 283.5 268 56.0
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.3e-70 270.0 291 48.8
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 7.5e-62 242.3 311 44.7
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.7e-58 231.1 191 58.6
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.8e-53 213.8 455 32.5
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.7e-45 186.8 158 62.0
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 6.4e-45 186.0 134 64.9
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.0e-42 178.7 195 49.7
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.5e-41 174.9 178 48.3
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.3e-41 173.3 145 60.7
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 7.5e-30 136.0 121 58.7
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.2e-29 134.4 127 55.9
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.0e-26 125.6 117 55.6
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.9e-26 123.6 135 49.6
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 6.2e-24 116.3 94 59.6
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.2e-22 112.1 118 50.8
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.6e-19 101.7 99 50.5
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.7e-18 98.2 65 69.2
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.9e-18 97.1 72 59.7
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 1.1e-12 79.0 355 27.9
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.7e-10 71.6 59 59.3
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 3.9e-10 70.5 40 77.5
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 1.9e-09 68.2 63 57.1


User provided reference genes

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