Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.2e-169 599.7 302 100.0
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.9e-128 461.8 290 79.3
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 5.1e-128 461.5 292 82.2
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 6.7e-128 461.1 287 82.9
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 2.8e-126 455.7 286 80.1
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.7e-126 455.3 296 78.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 4.8e-126 454.9 292 80.8
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 5.2e-72 275.4 290 51.7
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 6.8e-72 275.0 292 50.3
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.2e-71 274.2 306 49.7
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.0e-71 273.5 290 53.4
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.4e-71 272.7 300 49.7
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 5.8e-71 271.9 286 53.1
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 9.8e-71 271.2 299 49.8
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 9.8e-71 271.2 300 50.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 9.8e-71 271.2 285 51.2
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.1e-69 267.7 195 69.7
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.1e-69 267.7 299 49.2
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.9e-69 266.9 298 50.0
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 3.2e-69 266.2 290 50.7
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.2e-68 264.2 290 47.6
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.6e-68 263.8 289 50.5
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 3.5e-68 262.7 286 49.0
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 4.6e-68 262.3 293 50.5
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 6.0e-68 261.9 291 51.2
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 6.0e-68 261.9 288 50.0
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.7e-67 260.4 289 49.5
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 5.0e-67 258.8 301 49.5
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.3e-66 256.1 297 48.8
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 7.3e-66 255.0 294 46.9
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 7.3e-66 255.0 299 47.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 9.5e-66 254.6 294 46.9
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 2.1e-65 253.4 296 48.3
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.8e-65 253.1 299 46.5
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 2.8e-65 253.1 299 47.8
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 6.2e-65 251.9 285 49.8
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 8.1e-65 251.5 289 49.8
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.3e-64 250.0 292 49.3
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 6.8e-64 248.4 286 47.2
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 6.8e-64 248.4 293 49.5
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 6.8e-64 248.4 289 47.8
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.6e-63 246.5 292 47.9
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.6e-63 246.5 287 46.0
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 5.8e-63 245.4 285 47.7
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.7e-62 243.8 291 45.7
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 3.7e-62 242.7 288 46.5
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 6.4e-62 241.9 287 47.7
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 2.4e-61 240.0 292 46.2
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 3.2e-61 239.6 289 47.8
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 7.1e-61 238.4 284 48.9
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.2e-60 237.7 297 46.1
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.2e-60 237.7 261 50.2
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-60 237.7 261 50.2
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 2.7e-60 236.5 290 44.8
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.5e-60 236.1 261 49.8
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.6e-60 235.7 292 46.9
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 4.6e-60 235.7 233 51.5
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.0e-59 234.6 294 43.2
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.0e-59 234.6 291 46.0
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.3e-59 234.2 291 46.7
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.3e-59 233.4 261 49.0
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.3e-59 233.4 261 49.4
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 3.0e-59 233.0 257 47.9
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 2.5e-58 229.9 298 43.6
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.6e-57 227.3 296 44.3
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 3.6e-57 226.1 287 46.7
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.8e-56 223.8 287 45.3
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 8.9e-56 221.5 270 47.4
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 9.2e-53 211.5 210 53.3
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 9.2e-53 211.5 293 41.3
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 7.8e-52 208.4 306 40.5
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.1e-50 204.5 286 43.7
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 2.5e-50 203.4 258 44.2
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 9.6e-50 201.4 282 42.2
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.8e-49 199.9 286 42.0
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 2.0e-47 193.7 161 60.2
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.0e-47 193.7 342 37.4
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 4.9e-46 189.1 210 47.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.1e-45 188.0 299 42.1
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 7.1e-45 185.3 280 41.4
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 9.3e-45 184.9 280 41.4
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.2e-44 184.5 284 41.5
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.6e-44 184.1 279 40.1
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.3e-43 180.3 285 40.7
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.5e-42 176.8 197 51.8
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.3e-42 176.0 229 46.7
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 2.8e-41 173.3 237 46.4
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 3.6e-41 172.9 195 47.2
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 8.1e-41 171.8 202 45.0
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 2.4e-40 170.2 150 58.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 9.9e-39 164.9 286 38.8
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.6e-36 157.5 212 42.0
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 6.0e-36 155.6 296 34.5
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 7.9e-36 155.2 318 30.8
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 5.1e-35 152.5 288 35.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.0e-31 140.6 288 35.1
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.9e-30 136.7 137 51.1
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.4e-29 134.4 200 40.0
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 1.9e-29 134.0 152 48.7
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 2.4e-29 133.7 222 38.7
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 3.2e-29 133.3 299 34.4
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 7.9e-28 128.6 223 38.1
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 3.0e-27 126.7 223 38.6
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.9e-27 126.3 267 30.7
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.5e-26 124.4 286 31.5
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.5e-26 123.6 216 36.1
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 4.8e-25 119.4 110 57.3
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.1e-24 118.2 93 65.6
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 5.3e-24 115.9 342 28.4
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 6.9e-24 115.5 236 33.9
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.2e-23 114.8 219 35.6
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.4e-21 107.8 128 48.4
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.6e-20 104.4 102 55.9
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.5e-20 103.2 190 35.8
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 6.7e-19 99.0 293 28.0
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 9.6e-18 95.1 79 68.4
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 6.9e-16 89.0 58 70.7
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 2.0e-15 87.4 58 69.0
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.6e-15 87.0 60 68.3
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.4e-15 86.7 81 58.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 3.4e-15 86.7 81 58.0
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 3.4e-15 86.7 185 33.5
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 6.5e-14 82.4 103 44.7
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.1e-13 81.6 57 68.4
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 2.5e-13 80.5 96 47.9
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 4.8e-09 66.2 51 58.8
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 3.1e-08 63.5 123 29.3
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 1.3e-06 58.2 181 27.6


User provided reference genes

Program Settings