Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 3.0e-51 204.9 104 100.0
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.3e-29 130.2 105 70.5
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.6e-26 120.2 105 65.7
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.8e-23 110.9 91 64.8
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 7.9e-20 100.5 104 60.6
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.0e-14 83.6 104 45.2
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.0e-14 83.6 101 51.5
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 5.0e-14 81.3 93 49.5
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 9.4e-13 77.0 96 43.8
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.7e-12 75.5 45 75.6
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 3.6e-12 75.1 100 43.0
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 7.9e-12 73.9 92 40.2
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.0e-11 73.6 93 44.1
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.4e-11 73.2 48 64.6
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.4e-11 73.2 48 64.6
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.4e-11 73.2 100 43.0
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-11 72.8 100 45.0
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.8e-11 72.8 101 46.5
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.8e-11 72.8 99 47.5
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.3e-11 72.4 100 45.0
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.9e-11 71.6 100 43.0
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.9e-11 71.6 96 52.1
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.9e-11 71.6 92 45.7
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.1e-11 71.2 102 45.1
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.1e-11 71.2 93 47.3
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 5.1e-11 71.2 100 40.0
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 6.7e-11 70.9 99 43.4
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 6.7e-11 70.9 96 42.7
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 6.7e-11 70.9 90 50.0
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 6.7e-11 70.9 92 44.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 8.8e-11 70.5 92 45.7
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 8.8e-11 70.5 52 59.6
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 8.8e-11 70.5 52 59.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 8.8e-11 70.5 96 43.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.5e-10 69.7 90 42.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.0e-10 69.3 75 52.0
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.0e-10 69.3 100 42.0
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.5e-10 68.9 100 43.0
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 3.3e-10 68.6 75 50.7
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 3.3e-10 68.6 96 45.8
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 4.3e-10 68.2 99 44.4
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.3e-10 68.2 99 47.5
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 5.7e-10 67.8 88 47.7
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 5.7e-10 67.8 91 40.7
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.7e-10 67.8 100 41.0
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 7.4e-10 67.4 46 67.4
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.4e-10 67.4 65 55.4
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.7e-10 67.0 94 47.9
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.7e-10 67.0 62 56.5
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 9.7e-10 67.0 99 41.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 9.7e-10 67.0 99 41.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-09 66.6 95 42.1
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.3e-09 66.6 95 42.1
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-09 66.6 100 43.0
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-09 66.6 101 38.6
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.3e-09 66.6 101 38.6
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.7e-09 66.2 97 45.4
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.7e-09 66.2 97 44.3
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.7e-09 66.2 101 40.6
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 2.2e-09 65.9 47 59.6
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.2e-09 65.9 100 42.0
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.2e-09 65.9 79 49.4
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.8e-09 65.5 100 40.0
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-09 65.5 91 45.1
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.8e-09 65.5 100 42.0
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.8e-09 65.5 102 41.2
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.7e-09 65.1 100 42.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.7e-09 65.1 101 39.6
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 3.7e-09 65.1 100 41.0
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.7e-09 65.1 96 44.8
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 4.8e-09 64.7 87 43.7
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 4.8e-09 64.7 41 65.9
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 4.8e-09 64.7 100 41.0
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 6.3e-09 64.3 99 43.4
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 6.3e-09 64.3 39 66.7
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 6.3e-09 64.3 91 45.1
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.3e-09 64.3 100 45.0
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.2e-09 63.9 102 45.1
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 8.2e-09 63.9 101 40.6
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 8.2e-09 63.9 100 39.0
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 8.2e-09 63.9 102 45.1
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 8.2e-09 63.9 100 39.0
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 8.2e-09 63.9 99 39.4
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 1.1e-08 63.5 40 70.0
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.1e-08 63.5 62 48.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-08 63.5 95 42.1
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-08 63.5 106 45.3
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-08 63.5 100 43.0
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.1e-08 63.5 104 43.3
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.4e-08 63.2 100 38.0
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-08 63.2 100 42.0
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.4e-08 63.2 100 40.0
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.8e-08 62.8 93 45.2
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.8e-08 62.8 108 38.9
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-08 62.4 100 38.0
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.4e-08 62.4 44 65.9
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.1e-08 62.0 42 64.3
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.1e-08 62.0 100 38.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.1e-08 61.6 100 36.0
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 4.1e-08 61.6 100 39.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 5.3e-08 61.2 45 60.0
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.3e-08 61.2 91 42.9
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.3e-08 61.2 48 58.3
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 6.9e-08 60.8 93 39.8
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 6.9e-08 60.8 93 39.8
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 6.9e-08 60.8 113 39.8
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 6.9e-08 60.8 88 38.6
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 6.9e-08 60.8 91 37.4
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 6.9e-08 60.8 91 42.9
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 6.9e-08 60.8 105 41.9
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 6.9e-08 60.8 88 38.6
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 6.9e-08 60.8 105 42.9
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 6.9e-08 60.8 64 53.1
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 9.1e-08 60.5 47 57.4
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 9.1e-08 60.5 100 43.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 9.1e-08 60.5 108 43.5
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 9.1e-08 60.5 91 40.7
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.2e-07 60.1 100 43.0
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.5e-07 59.7 93 44.1
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.5e-07 59.7 93 39.8
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.5e-07 59.7 93 39.8
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.5e-07 59.7 100 38.0
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.0e-07 59.3 93 40.9
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 2.0e-07 59.3 37 70.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.0e-07 59.3 37 70.3
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.0e-07 59.3 37 70.3
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.0e-07 59.3 37 70.3
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.0e-07 59.3 39 61.5
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.0e-07 59.3 104 42.3
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.6e-07 58.9 46 56.5
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.6e-07 58.9 105 41.9
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 2.6e-07 58.9 30 80.0
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 2.6e-07 58.9 84 40.5
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 3.4e-07 58.5 45 57.8
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.4e-07 58.5 37 70.3
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 3.4e-07 58.5 92 38.0
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.4e-07 58.5 91 37.4
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.4e-07 58.5 69 47.8
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 3.4e-07 58.5 32 78.1
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.4e-07 58.5 47 55.3
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 4.5e-07 58.2 47 51.1
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.5e-07 58.2 99 40.4
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 5.9e-07 57.8 100 36.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.9e-07 57.8 92 40.2
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 5.9e-07 57.8 108 39.8
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.9e-07 57.8 98 36.7
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 5.9e-07 57.8 93 40.9
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 7.7e-07 57.4 91 39.6
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 1.0e-06 57.0 36 69.4
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.0e-06 57.0 93 37.6
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.3e-06 56.6 104 37.5
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-06 56.6 92 41.3
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.3e-06 56.6 98 35.7
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-06 56.2 92 40.2
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-06 56.2 90 40.0
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.2e-06 55.8 97 40.2
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.2e-06 55.8 99 38.4
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.2e-06 55.8 46 52.2
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.2e-06 55.8 98 40.8
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.2e-06 55.8 46 56.5
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 2.2e-06 55.8 95 37.9
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 2.9e-06 55.5 104 34.6
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.9e-06 55.5 41 58.5
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 2.9e-06 55.5 100 41.0
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.8e-06 55.1 91 34.1
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 3.8e-06 55.1 56 48.2
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.8e-06 55.1 101 39.6
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 5.0e-06 54.7 109 36.7
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.0e-06 54.7 98 35.7


User provided reference genes

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