Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 7.3e-198 693.7 360 100.0
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 2.9e-162 575.5 364 85.7
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 9.0e-156 553.9 362 83.7
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 6.1e-152 541.2 374 79.1
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 3.0e-143 512.3 409 72.1
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 1.8e-132 476.5 363 71.9
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 5.0e-106 388.7 373 59.8
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 5.2e-103 378.6 373 58.7
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 9.8e-102 374.4 369 58.0
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 8.6e-98 361.3 364 58.8
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 1.5e-97 360.5 361 57.3
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 1.5e-97 360.5 382 57.1
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 7.3e-97 358.2 364 57.1
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 6.2e-96 355.1 379 56.2
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 2.6e-94 349.7 382 54.2
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 1.1e-92 344.4 366 54.9
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 1.4e-92 344.0 370 54.3
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 1.9e-92 343.6 362 54.4
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 2.1e-91 340.1 359 55.7
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 3.5e-91 339.3 366 52.5
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 4.6e-91 339.0 365 55.6
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 6.0e-91 338.6 365 54.8
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 3.9e-90 335.9 374 52.1
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 8.6e-90 334.7 367 51.8
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 4.3e-89 332.4 364 54.1
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 4.3e-89 332.4 364 54.1
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 5.6e-89 332.0 368 52.4
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 2.8e-88 329.7 366 53.0
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 8.1e-88 328.2 361 52.6
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 2.3e-87 326.6 366 52.5
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 3.1e-87 326.2 373 52.8
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 3.1e-87 326.2 373 50.7
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 3.1e-87 326.2 363 51.5
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 4.0e-87 325.9 360 53.6
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 5.2e-87 325.5 359 52.4
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 6.8e-87 325.1 368 52.4
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 8.9e-87 324.7 364 55.8
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 2.6e-86 323.2 398 50.5
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 4.4e-86 322.4 373 52.8
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 5.8e-86 322.0 383 50.1
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 7.6e-86 321.6 371 50.1
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 9.9e-86 321.2 359 52.9
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 9.9e-86 321.2 368 53.0
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 9.9e-86 321.2 453 46.8
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 1.3e-85 320.9 407 50.1
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 1.7e-85 320.5 354 52.5
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 1.7e-85 320.5 367 52.0
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 2.2e-85 320.1 366 50.0
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 1.4e-84 317.4 371 53.4
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 3.2e-84 316.2 368 52.7
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 3.2e-84 316.2 359 52.6
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 3.5e-83 312.8 383 51.4
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 4.6e-83 312.4 369 49.6
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 6.0e-83 312.0 359 52.1
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 1.0e-82 311.2 379 47.0
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 1.7e-82 310.5 368 50.0
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 4.3e-81 305.8 278 58.3
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 3.6e-80 302.8 358 51.7
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 1.8e-79 300.4 364 48.6
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 1.8e-79 300.4 364 47.5
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 3.1e-79 299.7 363 48.2
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 5.2e-79 298.9 363 48.2
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 5.2e-79 298.9 362 48.9
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 6.8e-79 298.5 365 47.4
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 1.2e-78 297.7 361 52.4
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 1.7e-77 293.9 395 47.3
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 2.9e-77 293.1 370 49.7
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 1.1e-76 291.2 232 66.8
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 1.1e-76 291.2 370 49.5
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 1.6e-75 287.3 366 49.2
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 3.5e-75 286.2 278 56.8
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 2.3e-74 283.5 280 58.2
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 8.7e-74 281.6 236 64.0
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 2.8e-72 276.6 332 49.4
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 4.9e-69 265.8 371 47.4
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 4.9e-69 265.8 369 47.4
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.7e-66 257.3 229 62.0
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 3.3e-65 253.1 236 58.1
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 4.3e-65 252.7 233 58.8
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 7.3e-65 251.9 249 55.0
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 1.1e-63 248.1 259 55.2
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 5.8e-62 242.3 367 42.0
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 1.9e-60 237.3 372 41.4
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 2.4e-60 236.9 345 42.9
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 5.5e-60 235.7 461 38.6
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 1.6e-59 234.2 242 55.0
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 7.9e-59 231.9 276 51.8
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 1.3e-58 231.1 375 44.3
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 3.3e-57 226.5 313 46.6
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 5.3e-55 219.2 287 45.6
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 1.0e-53 214.9 274 48.9
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 1.7e-53 214.2 267 48.3
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 4.2e-52 209.5 382 41.9
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 7.1e-52 208.8 147 72.1
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 9.3e-52 208.4 360 40.3
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 2.7e-51 206.8 248 48.4
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 1.0e-50 204.9 261 50.6
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 2.3e-50 203.8 230 50.9
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 7.4e-49 198.7 252 49.2
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 1.3e-48 198.0 274 46.7
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 4.5e-46 189.5 268 46.6
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 5.5e-44 182.6 225 45.3
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 2.4e-39 167.2 233 45.1
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 5.0e-37 159.5 385 32.5
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 1.6e-35 154.5 375 34.9
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 6.3e-32 142.5 141 59.6
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 1.4e-31 141.4 282 39.0
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 3.1e-31 140.2 207 44.0
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 3.1e-31 140.2 366 32.5
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 8.5e-29 132.1 144 53.5
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 8.5e-29 132.1 144 53.5
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 3.9e-26 123.2 206 42.7
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 6.3e-24 115.9 189 41.8
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 2.4e-23 114.0 92 63.0
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 5.0e-21 106.3 117 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 6.5e-21 105.9 238 34.5
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 5.7e-17 92.8 94 54.3
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 5.7e-17 92.8 64 68.8
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 9.7e-17 92.0 98 54.1
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 1.3e-13 81.6 284 28.5
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 1.9e-12 77.8 63 65.1
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 2.5e-12 77.4 92 50.0
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 2.3e-10 70.9 72 55.6
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 2.3e-10 70.9 52 59.6
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 2.3e-10 70.9 52 59.6
BcaC04g19543 Brassica carinata HOM05D006712 ORTHO05D008219 2.7e-06 57.4 39 69.2


User provided reference genes

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