Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 2.8e-79 298.5 145 100.0
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 1.9e-72 275.8 146 91.1
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 1.9e-72 275.8 146 91.1
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 2.8e-71 271.9 146 89.0
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 2.4e-67 258.8 146 85.6
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 3.3e-64 248.4 143 84.6
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.3e-64 248.4 140 85.7
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 6.2e-63 244.2 145 79.3
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 1.2e-61 240.0 146 81.5
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 1.5e-61 239.6 147 80.3
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 4.4e-61 238.0 144 79.9
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 4.4e-61 238.0 145 80.0
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 5.8e-61 237.7 146 78.8
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 5.8e-61 237.7 146 78.8
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 9.9e-61 236.9 149 77.9
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 1.7e-60 236.1 143 79.0
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 3.7e-60 235.0 143 79.0
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 3.7e-60 235.0 148 76.4
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 3.7e-60 235.0 143 79.0
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 3.7e-60 235.0 143 79.0
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 3.7e-60 235.0 140 80.0
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 1.1e-59 233.4 148 75.7
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 1.1e-59 233.4 148 75.7
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 1.1e-59 233.4 147 76.9
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.9e-59 232.6 142 77.5
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 1.9e-59 232.6 143 76.9
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 1.9e-59 232.6 147 77.6
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 1.9e-59 232.6 147 77.6
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 3.2e-59 231.9 148 75.0
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 3.2e-59 231.9 143 76.9
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 4.1e-59 231.5 144 75.7
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 4.1e-59 231.5 145 77.9
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 7.1e-59 230.7 147 76.9
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 9.2e-59 230.3 140 77.9
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 9.2e-59 230.3 148 75.0
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 9.2e-59 230.3 148 75.0
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 9.2e-59 230.3 140 78.6
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.2e-58 229.9 140 77.1
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 1.2e-58 229.9 140 77.9
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.6e-58 229.6 146 78.1
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 2.1e-58 229.2 140 77.1
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 2.1e-58 229.2 152 74.3
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 2.1e-58 229.2 147 76.9
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 3.5e-58 228.4 143 77.6
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 3.5e-58 228.4 144 77.1
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 4.6e-58 228.0 150 76.7
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.0e-58 227.6 146 77.4
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 6.0e-58 227.6 146 77.4
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 6.0e-58 227.6 141 80.1
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 7.8e-58 227.3 144 77.1
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 7.8e-58 227.3 144 74.3
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 1.7e-57 226.1 144 77.8
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 2.3e-57 225.7 139 77.0
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 3.9e-57 224.9 141 78.0
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 3.9e-57 224.9 143 76.2
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 3.9e-57 224.9 148 76.4
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 3.9e-57 224.9 142 77.5
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 5.1e-57 224.6 137 76.6
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 5.1e-57 224.6 148 76.4
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 6.6e-57 224.2 144 74.3
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 6.6e-57 224.2 149 74.5
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 1.5e-56 223.0 141 75.2
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.5e-56 223.0 144 73.6
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.9e-56 222.6 145 75.2
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 1.9e-56 222.6 144 73.6
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 1.9e-56 222.6 144 74.3
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 2.5e-56 222.2 144 76.4
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 2.5e-56 222.2 145 76.6
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 3.3e-56 221.9 145 75.2
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 5.6e-56 221.1 113 86.7
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 7.3e-56 220.7 116 84.5
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 7.3e-56 220.7 149 73.8
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.6e-55 219.5 142 74.6
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 1.6e-55 219.5 149 73.8
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 1.6e-55 219.5 141 75.9
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 2.1e-55 219.2 144 75.0
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 4.7e-55 218.0 143 74.8
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 8.1e-55 217.2 119 82.4
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 1.4e-54 216.5 147 73.5
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 1.8e-54 216.1 143 73.4
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 2.4e-54 215.7 148 74.3
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 3.1e-54 215.3 141 73.0
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.2e-53 213.4 143 74.1
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 1.2e-53 213.4 140 72.9
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 1.5e-53 213.0 148 70.9
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 2.6e-53 212.2 137 74.5
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 2.6e-53 212.2 145 72.4
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 4.4e-53 211.5 141 70.9
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 4.4e-53 211.5 113 82.3
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 5.8e-53 211.1 144 72.9
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.8e-52 208.4 142 71.8
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 3.8e-52 208.4 142 73.2
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 4.9e-52 208.0 141 72.3
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 6.4e-52 207.6 142 71.8
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 8.4e-52 207.2 141 71.6
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 2.4e-51 205.7 145 67.6
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.2e-51 205.3 142 70.4
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 5.4e-51 204.5 142 71.1
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 7.1e-51 204.1 143 71.3
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.2e-50 203.4 145 66.2
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 4.6e-50 201.4 114 81.6
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 8.7e-49 197.2 116 77.6
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 2.1e-47 192.6 144 66.7
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 4.0e-46 188.3 137 67.2
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 2.0e-45 186.0 143 67.1
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 4.9e-44 181.4 133 66.9
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 1.4e-43 179.9 99 80.8
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.2e-43 178.7 87 92.0
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 3.2e-43 178.7 117 79.5
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.2e-42 176.8 89 87.6
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 4.6e-42 174.9 117 73.5
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 1.3e-41 173.3 143 60.1
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.3e-41 172.6 139 59.0
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 8.7e-41 170.6 149 58.4
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 3.3e-40 168.7 119 73.9
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 1.3e-39 166.8 112 74.1
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 3.4e-37 158.7 120 64.2
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 6.4e-36 154.5 89 76.4
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 4.2e-35 151.8 115 67.0
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 2.7e-34 149.1 114 69.3
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.3e-33 146.7 115 70.4
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 5.6e-32 141.4 113 66.4
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 5.3e-30 134.8 88 71.6
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 2.6e-29 132.5 113 66.4
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 2.2e-28 129.4 148 52.0
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 1.6e-26 123.2 90 73.3
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 4.9e-20 101.7 91 51.6
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 1.2e-18 97.1 154 43.5
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 2.7e-18 95.9 89 57.3
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.3e-17 93.6 78 67.9
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 4.3e-16 88.6 137 39.4
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.3e-12 77.0 69 60.9
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 1.1e-11 73.9 75 61.3
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 3.6e-10 68.9 70 58.6


User provided reference genes

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