Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 3.3e-29 131.0 63 100.0
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.5e-26 122.1 62 88.7
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.0e-26 121.7 62 91.9
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.4e-26 120.9 62 88.7
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 5.8e-26 120.2 62 90.3
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 5.8e-26 120.2 61 90.2
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 7.6e-26 119.8 62 88.7
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.3e-25 119.0 61 86.9
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.3e-25 119.0 61 85.2
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 1.7e-25 118.6 61 86.9
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 1.7e-25 118.6 61 85.2
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 1.7e-25 118.6 62 87.1
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 2.2e-25 118.2 61 86.9
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 2.9e-25 117.9 61 85.2
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 2.9e-25 117.9 61 86.9
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.8e-25 117.5 62 87.1
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 3.8e-25 117.5 61 85.2
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.8e-25 117.5 61 86.9
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.5e-25 116.7 62 85.5
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.5e-25 116.7 61 86.9
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 6.5e-25 116.7 61 88.5
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.5e-25 116.7 61 85.2
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.5e-25 116.7 61 85.2
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 6.5e-25 116.7 61 85.2
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 8.4e-25 116.3 61 86.9
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.4e-25 116.3 61 83.6
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.4e-25 116.3 61 83.6
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.4e-25 116.3 61 83.6
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.4e-25 116.3 61 83.6
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 8.4e-25 116.3 61 85.2
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-24 115.5 62 83.9
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.4e-24 115.5 61 82.0
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.4e-24 115.5 61 85.2
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 1.4e-24 115.5 61 86.9
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.4e-24 115.5 61 82.0
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.9e-24 115.2 61 82.0
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.9e-24 115.2 61 82.0
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.9e-24 115.2 61 83.6
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.9e-24 115.2 62 83.9
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 1.9e-24 115.2 61 83.6
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 1.9e-24 115.2 61 83.6
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.5e-24 114.8 61 85.2
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.5e-24 114.8 61 85.2
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.5e-24 114.8 61 85.2
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.5e-24 114.8 61 85.2
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.5e-24 114.8 61 85.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.5e-24 114.8 62 82.3
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 2.5e-24 114.8 61 83.6
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 3.2e-24 114.4 61 85.2
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.2e-24 114.4 61 85.2
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 3.2e-24 114.4 62 83.9
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 3.2e-24 114.4 61 83.6
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 3.2e-24 114.4 61 83.6
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 4.2e-24 114.0 61 82.0
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.2e-24 114.0 62 82.3
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.5e-24 113.6 61 83.6
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 5.5e-24 113.6 61 82.0
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.5e-24 113.6 61 82.0
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.5e-24 113.6 61 82.0
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.5e-24 113.6 61 82.0
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.5e-24 113.6 61 82.0
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 5.5e-24 113.6 61 82.0
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 5.5e-24 113.6 62 80.6
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 7.1e-24 113.2 61 83.6
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 7.1e-24 113.2 61 83.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.1e-24 113.2 61 78.7
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 7.1e-24 113.2 63 79.4
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.2e-23 112.5 62 82.3
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.2e-23 112.5 62 82.3
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.2e-23 112.5 62 82.3
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.2e-23 112.5 61 85.2
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.6e-23 112.1 61 82.0
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 2.1e-23 111.7 61 83.6
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 82.3
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 82.3
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.1e-23 111.7 61 80.3
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.1e-23 111.7 61 80.3
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.1e-23 111.7 61 82.0
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 2.7e-23 111.3 62 80.6
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.7e-23 111.3 61 83.6
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 3.5e-23 110.9 61 80.3
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 3.5e-23 110.9 61 80.3
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 3.5e-23 110.9 61 78.7
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.5e-23 110.9 62 80.6
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.6e-23 110.5 61 77.0
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 4.6e-23 110.5 62 79.0
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 6.0e-23 110.2 61 82.0
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.0e-23 110.2 64 78.1
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 6.0e-23 110.2 61 80.3
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 7.9e-23 109.8 61 78.7
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.0e-22 109.4 62 80.6
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.0e-22 109.4 62 80.6
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.0e-22 109.4 62 80.6
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.0e-22 109.4 62 80.6
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.0e-22 109.4 62 80.6
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.0e-22 109.4 62 80.6
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.0e-22 109.4 61 80.3
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.0e-22 109.4 61 80.3
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.3e-22 109.0 61 80.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.3e-22 109.0 81 67.9
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.3e-22 109.0 62 82.3
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.8e-22 108.6 61 78.7
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 1.8e-22 108.6 62 77.4
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.3e-22 108.2 61 82.0
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 2.3e-22 108.2 62 79.0
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 3.0e-22 107.8 62 77.4
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 3.0e-22 107.8 62 80.6
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 3.9e-22 107.5 61 75.4
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 3.9e-22 107.5 62 75.8
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.9e-22 107.5 61 78.7
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 5.1e-22 107.1 61 78.7
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 5.1e-22 107.1 61 78.7
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 5.1e-22 107.1 61 78.7
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 6.7e-22 106.7 61 78.7
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 6.7e-22 106.7 61 78.7
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 6.7e-22 106.7 61 77.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 6.7e-22 106.7 61 78.7
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 8.7e-22 106.3 61 73.8
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.1e-21 105.9 61 77.0
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 1.5e-21 105.5 61 75.4
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.5e-21 105.5 61 80.3
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 1.9e-21 105.1 83 62.7
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 1.9e-21 105.1 60 76.7
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 1.9e-21 105.1 61 75.4
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.9e-21 105.1 69 71.0
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 5.7e-21 103.6 61 73.8
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 9.6e-21 102.8 62 72.6
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.6e-20 102.1 62 75.8
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.6e-20 102.1 61 73.8
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.6e-20 102.1 61 73.8
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.1e-19 97.8 61 73.8
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 3.1e-19 97.8 61 73.8
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 4.1e-19 97.4 61 67.2
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 6.9e-19 96.7 61 70.5
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 6.9e-19 96.7 91 56.0
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 9.0e-19 96.3 61 68.9
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 1.2e-18 95.9 91 56.0
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.2e-18 95.9 58 72.4
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.2e-18 95.9 61 67.2
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.5e-18 95.5 61 67.2
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 2.0e-18 95.1 85 55.3
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.4e-18 94.4 89 51.7
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.6e-18 93.2 46 89.1
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 5.0e-17 90.5 46 84.8
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 5.0e-17 90.5 58 67.2
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.0e-17 90.5 71 62.0
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 6.5e-17 90.1 46 84.8
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 6.5e-17 90.1 115 46.1
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 8.5e-17 89.7 60 68.3
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.9e-16 88.6 46 80.4
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.2e-16 87.4 46 82.6
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 5.5e-16 87.0 46 82.6
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 7.2e-16 86.7 46 84.8
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 7.2e-16 86.7 46 80.4
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 9.3e-16 86.3 46 78.3
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.7e-15 84.7 46 78.3
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 3.6e-15 84.3 47 74.5
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 4.6e-15 84.0 46 80.4
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 4.6e-15 84.0 46 78.3
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.0e-14 82.8 51 64.7
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 2.3e-14 81.6 46 76.1
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 3.9e-14 80.9 54 61.1
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 5.1e-14 80.5 46 73.9
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 6.7e-14 80.1 46 76.1
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 2.5e-13 78.2 49 69.4
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-13 78.2 47 72.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.7e-13 77.0 40 82.5
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 5.7e-13 77.0 51 66.7
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.4e-13 76.6 46 71.7
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 7.4e-13 76.6 56 60.7
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 1.3e-12 75.9 57 61.4
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.7e-12 74.3 46 71.7
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.8e-11 72.0 50 66.0
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 4.1e-11 70.9 47 61.7
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 5.3e-11 70.5 38 76.3
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 5.3e-11 70.5 46 60.9
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.9e-10 67.0 47 63.8
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.9e-10 67.0 47 63.8
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 5.5e-08 60.5 51 52.9
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.2e-07 59.3 32 75.0
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 1.6e-07 58.9 34 76.5
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 1.0e-06 56.2 30 76.7
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 1.4e-06 55.8 54 44.4


User provided reference genes

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