Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.0e-203 712.2 360 100.0
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.4e-178 627.5 360 87.5
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.6e-176 622.9 360 86.9
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 6.3e-157 557.8 360 79.4
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 6.3e-157 557.8 384 76.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 4.1e-156 555.1 337 83.7
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.3e-130 470.3 370 64.6
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.5e-130 467.6 372 64.0
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.2e-128 463.8 371 64.2
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.0e-127 460.7 370 63.5
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.5e-121 439.5 348 64.7
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.3e-117 427.2 250 86.0
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.5e-113 412.9 373 56.6
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.8e-111 406.8 370 55.7
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.3e-109 400.6 370 55.1
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.2e-109 399.8 372 53.8
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.4e-108 397.1 375 53.1
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 4.1e-108 395.6 370 53.2
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 4.1e-108 395.6 370 54.9
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 3.5e-107 392.5 370 52.4
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.5e-107 392.5 370 53.5
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.5e-107 392.5 370 53.5
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 3.5e-107 392.5 323 64.4
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 5.9e-107 391.7 370 53.8
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.3e-106 390.6 370 53.8
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.0e-106 388.7 371 53.4
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 6.6e-106 388.3 370 51.9
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 8.6e-106 387.9 370 54.3
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.5e-105 387.1 370 55.1
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.9e-105 386.7 370 53.0
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.3e-105 386.0 370 53.8
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.3e-105 386.0 371 52.0
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 9.5e-105 384.4 370 52.7
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 6.1e-104 381.7 370 52.2
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.0e-103 380.9 372 52.4
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.8e-103 380.2 370 53.2
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.8e-103 380.2 370 52.4
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.8e-103 380.2 361 52.9
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 2.3e-103 379.8 373 52.0
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 6.8e-103 378.3 370 52.2
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 6.8e-103 378.3 370 51.1
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.2e-102 377.5 371 51.8
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.5e-102 377.1 370 51.1
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 3.4e-102 375.9 370 50.8
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 5.8e-102 375.2 369 50.7
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 7.5e-102 374.8 372 50.8
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 7.5e-102 374.8 413 48.4
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.3e-101 374.0 371 50.1
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 1.7e-101 373.6 369 52.0
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.7e-101 373.6 371 51.8
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 2.9e-101 372.9 378 51.3
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 6.4e-101 371.7 367 52.6
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 6.4e-101 371.7 371 51.5
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.9e-100 370.2 371 51.8
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.9e-100 370.2 369 52.3
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.4e-100 369.8 374 50.5
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 7.0e-100 368.2 372 50.8
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.0e-99 365.2 370 49.7
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 6.0e-99 365.2 375 50.1
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 7.8e-99 364.8 371 51.2
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.3e-98 363.2 370 49.5
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 3.0e-98 362.8 370 50.5
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 6.6e-98 361.7 370 50.3
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.1e-97 360.9 371 50.7
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 3.3e-97 359.4 378 50.5
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 3.3e-97 359.4 373 51.7
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 5.6e-97 358.6 370 49.5
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 9.5e-97 357.8 371 49.3
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.6e-96 355.9 378 50.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 3.6e-96 355.9 378 50.8
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 6.2e-96 355.1 370 49.5
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 6.2e-96 355.1 373 49.3
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 8.1e-96 354.8 376 51.1
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 1.1e-95 354.4 378 50.5
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 1.8e-95 353.6 375 49.3
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.3e-95 353.2 379 50.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 5.2e-95 352.1 378 50.3
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 6.8e-95 351.7 374 50.5
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 1.2e-94 350.9 361 49.3
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.5e-94 350.5 375 49.6
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 2.6e-94 349.7 370 48.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 5.8e-94 348.6 379 49.1
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.8e-94 348.6 367 48.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.8e-94 348.6 367 48.8
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 5.8e-94 348.6 378 49.7
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 7.5e-94 348.2 379 49.1
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 9.8e-94 347.8 401 46.9
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.7e-93 347.1 370 47.8
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 2.9e-93 346.3 380 48.7
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 4.9e-93 345.5 352 51.7
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 6.4e-93 345.1 354 52.8
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.1e-92 344.4 378 47.9
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.9e-92 343.6 372 53.5
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.9e-92 343.6 370 49.5
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.4e-92 343.2 374 48.4
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 3.2e-92 342.8 384 48.4
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 7.8e-91 338.2 345 51.0
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.7e-90 337.0 352 50.6
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 8.6e-90 334.7 340 52.4
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.9e-89 333.6 355 49.3
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.6e-88 330.5 353 51.0
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 8.1e-88 328.2 374 46.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.4e-87 327.4 321 52.3
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.4e-87 327.4 359 48.7
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 6.8e-87 325.1 389 45.8
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.6e-86 323.2 368 45.7
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 3.4e-86 322.8 356 49.7
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 5.8e-86 322.0 360 47.2
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 7.6e-86 321.6 329 50.8
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.3e-85 320.9 374 45.5
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 4.1e-84 315.8 356 46.9
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 5.4e-84 315.5 323 49.2
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 9.2e-84 314.7 351 48.1
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 4.6e-83 312.4 335 51.0
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 2.3e-82 310.1 378 45.8
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.9e-81 307.0 329 48.6
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 5.6e-81 305.4 297 53.5
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.2e-80 304.3 372 43.8
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 1.6e-80 303.9 335 49.3
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.4e-79 300.8 298 52.3
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 8.9e-79 298.1 360 44.4
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 4.9e-69 265.8 285 49.5
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 6.4e-69 265.4 373 39.7
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 6.6e-66 255.4 346 41.9
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 1.1e-63 248.1 403 37.7
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.2e-62 244.6 382 36.9
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.2e-61 240.4 301 47.2
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 8.7e-58 228.4 269 48.0
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.4e-55 221.1 283 45.6
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 6.9e-55 218.8 218 52.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 7.6e-54 215.3 241 48.1
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 7.6e-54 215.3 482 33.0
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 4.6e-51 206.1 329 35.6
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.0e-50 204.9 384 32.0
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 6.3e-48 195.7 259 42.5
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 5.9e-46 189.1 191 48.2
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.9e-44 184.1 232 44.8
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.3e-42 177.9 374 30.5
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.3e-40 171.4 220 40.5
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.1e-39 168.3 255 40.4
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 5.5e-36 156.0 151 51.0
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 6.7e-34 149.1 205 44.9
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.8e-32 143.7 138 46.4
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.1e-31 140.2 115 54.8
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 7.4e-25 119.0 433 24.0
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 1.8e-18 97.8 68 60.3
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.0e-18 97.1 147 40.1
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.1e-17 95.1 208 27.9
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 2.3e-10 70.9 73 49.3
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.8e-10 68.9 121 33.1
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.4e-07 61.6 42 61.9


User provided reference genes

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