Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.7e-105 386.0 185 100.0
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 2.7e-71 272.3 198 72.2
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 3.5e-71 271.9 198 72.2
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.5e-71 271.9 198 72.2
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.0e-70 270.4 198 71.7
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.3e-70 269.2 200 70.5
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 4.3e-69 265.0 198 70.2
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.8e-68 261.5 192 69.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.4e-67 259.2 198 67.7
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.4e-67 259.2 198 66.7
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 4.0e-67 258.5 198 68.2
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.6e-66 255.8 198 66.2
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 6.4e-65 251.1 197 65.5
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 8.4e-65 250.8 198 64.6
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.1e-64 250.4 198 64.6
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 1.4e-64 250.0 198 64.6
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.9e-64 249.6 198 64.6
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 3.2e-64 248.8 198 64.6
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 3.2e-64 248.8 198 64.1
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.2e-63 246.9 195 64.6
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.1e-63 246.1 197 64.0
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.1e-63 246.1 196 63.8
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 2.1e-63 246.1 198 65.2
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.7e-63 245.7 198 64.1
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 2.7e-63 245.7 198 63.1
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 3.5e-63 245.4 197 63.5
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 4.6e-63 245.0 196 63.3
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 7.9e-63 244.2 198 63.6
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.0e-62 243.8 200 62.5
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 1.8e-62 243.0 198 62.6
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.8e-62 243.0 198 62.6
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 3.0e-62 242.3 196 62.8
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.0e-62 242.3 198 62.6
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 5.1e-62 241.5 198 63.1
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 5.1e-62 241.5 198 63.1
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 6.7e-62 241.1 197 62.4
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 8.7e-62 240.7 203 63.1
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 8.7e-62 240.7 198 64.1
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 8.7e-62 240.7 197 62.4
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 8.7e-62 240.7 195 65.6
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 8.7e-62 240.7 194 63.9
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.1e-61 240.4 198 61.6
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.1e-61 240.4 198 64.1
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.5e-61 240.0 206 60.2
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.9e-61 239.6 197 61.9
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.9e-61 239.6 197 61.9
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.9e-61 239.6 198 60.6
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.9e-61 239.6 194 62.9
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.9e-61 239.6 196 62.2
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.5e-61 239.2 194 63.4
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 2.5e-61 239.2 197 62.4
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 4.3e-61 238.4 190 64.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 5.6e-61 238.0 198 62.6
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 5.6e-61 238.0 198 62.6
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 5.6e-61 238.0 197 61.4
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 5.6e-61 238.0 197 61.4
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 5.6e-61 238.0 190 64.7
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 5.6e-61 238.0 196 63.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 7.4e-61 237.7 193 62.2
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 7.4e-61 237.7 198 63.1
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 9.6e-61 237.3 198 62.6
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 9.6e-61 237.3 198 62.6
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 9.6e-61 237.3 195 64.6
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 9.6e-61 237.3 217 58.5
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 1.3e-60 236.9 197 61.4
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.6e-60 236.5 198 62.1
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.6e-60 236.5 194 61.3
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 2.1e-60 236.1 194 61.3
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 2.8e-60 235.7 198 62.1
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 2.8e-60 235.7 198 60.6
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 2.8e-60 235.7 195 64.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 2.8e-60 235.7 208 61.5
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 2.8e-60 235.7 196 60.2
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 3.7e-60 235.3 198 62.1
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 3.7e-60 235.3 198 62.1
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 3.7e-60 235.3 198 60.1
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 3.7e-60 235.3 188 63.3
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.7e-60 235.3 198 62.6
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 4.8e-60 235.0 198 61.6
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 4.8e-60 235.0 198 60.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 4.8e-60 235.0 194 61.9
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 4.8e-60 235.0 220 59.1
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 6.2e-60 234.6 200 62.0
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 6.2e-60 234.6 198 61.6
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 6.2e-60 234.6 198 62.6
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 6.2e-60 234.6 201 59.7
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.1e-59 233.8 198 61.1
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.4e-59 233.4 195 61.0
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.1e-59 232.3 195 60.5
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 3.1e-59 232.3 195 60.5
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.0e-57 227.3 204 58.8
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 2.2e-57 226.1 197 61.4
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 8.4e-57 224.2 202 58.9
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.9e-56 223.0 195 58.5
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.2e-56 222.2 199 58.8
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.5e-56 221.5 199 56.8
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 2.7e-55 219.2 195 59.0
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 3.5e-55 218.8 192 59.4
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 2.1e-52 209.5 194 55.2
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 5.3e-51 204.9 178 58.4
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.6e-50 202.6 192 52.1
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.9e-49 199.1 269 43.9
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.5e-49 198.0 120 78.3
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 8.7e-46 187.6 192 53.6
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 8.7e-46 187.6 117 78.6
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.8e-44 182.6 178 55.6
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.6e-42 176.0 198 50.5
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 3.4e-42 175.6 199 49.2
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 3.8e-41 172.2 160 56.2
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.0e-41 171.8 94 83.0
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 6.5e-41 171.4 188 47.9
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.9e-40 169.9 133 63.2
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 3.2e-40 169.1 182 52.2
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 5.5e-40 168.3 96 80.2
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.0e-38 164.1 112 71.4
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 9.7e-37 157.5 198 47.0
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 3.7e-36 155.6 97 76.3
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.4e-35 152.9 190 42.1
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.5e-34 150.2 198 43.9
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.7e-31 138.7 156 50.0
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 6.3e-28 128.3 137 54.0
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 8.2e-28 127.9 206 37.9
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 3.1e-27 125.9 130 56.2
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 3.7e-20 102.4 66 78.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 6.3e-20 101.7 116 52.6
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 9.1e-19 97.8 99 53.5
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.8e-17 92.4 66 62.1
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 8.5e-17 91.3 196 35.7
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 2.1e-15 86.7 200 26.5
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 4.1e-11 72.4 107 44.9
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.4e-11 72.0 101 42.6
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 5.9e-10 68.6 102 40.2
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 8.6e-09 64.7 33 87.9


User provided reference genes

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